BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948085

Length=329
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G23600.1 | Symbols:  | alpha/beta-Hydrolases superfamily pro...   233    6e-61
  AT1G78510.1 | Symbols: SPS1 | solanesyl diphosphate synthase 1 ...   100    7e-21


> AT3G23600.1 | Symbols:  | alpha/beta-Hydrolases superfamily protein 
| chr3:8473775-8475858 FORWARD LENGTH=981
Length=981

 Score =  233 bits (126),  Expect = 6e-61
 Identities = 140/147 (95%), Gaps = 0/147 (0%)
 Strand=Plus/Plus

Query  159  TCTAGCTTCCAAACCCGAGATGAATAGTTACGTGAAGATACACCCGAAAGTGTCACACGG  218
            |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  619  TCTATCTTCCAAACCCGAGGTGAATAGTTACGTGAAGATACACCCGAAAGTGTCACACGG  678

Query  219  TTGGACAGTTAGATACAGCATCGATGATCCAGAGGCGGTTAAAGCTGCAGAAGAAGCTCA  278
             |||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||
Sbjct  679  ATGGACAGTTAGATACAACATCGATGAACCAGAGGCGGTTAAAGCAGCAGAAGAAGCTCA  738

Query  279  CAAAGAGATGCTTGATTGGTTTGTGAC  305
            ||| |||||||||||||||||||||||
Sbjct  739  CAAGGAGATGCTTGATTGGTTTGTGAC  765


> AT1G78510.1 | Symbols: SPS1 | solanesyl diphosphate synthase 
1 | chr1:29535285-29537417 REVERSE LENGTH=1600
Length=1600

 Score =  100 bits (54),  Expect = 7e-21
 Identities = 56/57 (98%), Gaps = 0/57 (0%)
 Strand=Plus/Plus

Query  42   GGGGAGTTGCAAAGCGGTGCCCACGAAATCAAAGGAGATCTCTTTGCTCAATGGTAT  98
            ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  389  GGGGAGTTGCAAAGCGGTGCCAACGAAATCAAAGGAGATCTCTTTGCTCAATGGTAT  445



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15331663445


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5