BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948089
Length=829
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38020.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 507 9e-143
AT3G21950.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 324 1e-87
> AT5G38020.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr5:15165652-15167729
REVERSE LENGTH=1446
Length=1446
Score = 507 bits (274), Expect = 9e-143
Identities = 372/419 (89%), Gaps = 7/419 (2%)
Strand=Plus/Plus
Query 21 ATGGGTGTTCTTAGCATGAAGGGTGGAGATGGAGAGCACAGTTATGCAAATAATTCCGAG 80
||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 39 ATGGGTGTTCTAAGCATGAAGGGAGGAGATGGAGAACACAGTTATGCTAATAATTCCGAG 98
Query 81 GGGCAGAAAAGTGTTGCTTCTAATGCAAAACCGGTGGTGGTAGAAAACGTAAAAGAAATG 140
|| |||||| || |||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 99 GGACAGAAACGTCTTGCTTCTGATGCAAAACCGGTGGTGGTAGAAACCGTAAAAGAAATG 158
Query 141 ATAGTGAAAATGGATTTTCCTAGTTGCATCAAAGTGGCCGATTTGGGATGTTCATCGGGG 200
|||||||||| ||||||||| |||| || ||||||||||| || |||||||| || |||
Sbjct 159 ATAGTGAAAACAGATTTTCCTGGTTGTATAAAAGTGGCCGACTTAGGATGTTCTTCCGGG 218
Query 201 GAAAACACATTAGTGGTCATGTCCGAAATTGTCAACACGATCA-TAGCAACATATCAAC- 258
|||||||| ||| |||||||||||||||| ||||||||||||| || || |||| ||||
Sbjct 219 GAAAACACGTTATTGGTCATGTCCGAAATAGTCAACACGATCATTA-CATCATACCAACA 277
Query 259 AAAAGAGTAAAAACCCACCAGAGATCGTTTGTTGTCTGAACGATCTTCCAGACAACGACT 318
||||| | |||||| |||||||||| ||||||| |||||||||| ||||||||||| |
Sbjct 278 AAAAG-GCAAAAACTTACCAGAGATCAATTGTTGTTTGAACGATCTCCCAGACAACGATT 336
Query 319 TCAACACTACTTTCAAATTAATCCCTGCCTTCCATAAGAAGCTGAAGATGAATGTTAAA- 377
|||||||||||||||| || ||||||||||||| ||| |||||||||| ||||||||
Sbjct 337 TCAACACTACTTTCAAGTTGGTCCCTGCCTTCCACAAGTTGCTGAAGATGGATGTTAAAG 396
Query 378 GAAAAGTGCTTCATCTCAGGAGTCCCAGGCTCATTCTACTCAAGACTCTTCCCTATGCA 436
| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 397 GGAAA-TGCTTCATCTCAGGAGTCCCAGGCTCATTCTACTCAAGACTTTTCCCTA-GCA 453
> AT3G21950.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr3:7734396-7736394
FORWARD LENGTH=1300
Length=1300
Score = 324 bits (175), Expect = 1e-87
Identities = 325/393 (83%), Gaps = 27/393 (7%)
Strand=Plus/Plus
Query 436 AGGGGGTTGTGAAGGAATCAGATATGGAATCTTTCAACTTGCCAT-TCTACAATCCTGAT 494
|||| |||||||||||||||||| ||||||||||||||||||| | | |||| |||||||
Sbjct 719 AGGGAGTTGTGAAGGAATCAGATTTGGAATCTTTCAACTTGCCGTAT-TACAGTCCTGAT 777
Query 495 GAAAGCGAAGT-TAGGAAAGTTATCGAAAACGAGGGCTCTTTCGAGATCAACAATTTCAA 553
||||| || || ||| |||||||||| ||||||||||| ||||||||||| ||||| |
Sbjct 778 GAAAGTGAGGTGAAGG-AAGTTATCGAGAACGAGGGCTCATTCGAGATCAAAAATTTTGA 836
Query 554 GACAATATTTGGACTTCTCTTTTCATACAAAACTGGCCTTACTGAAGTGAAAGATGATGA 613
|||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct 837 GACAATATTTGGACTTCTCTTTTCATACAAAACTGGTCATAGTGAAGTGAAAGATGATGA 896
Query 614 TC-TC--G---A---T-C--G---ATTTGAAGTAATTAAAAAGAGGACCAACATCATAAG 658
| | | | | | | ||||||||| |||||| |||| | || || | |||
Sbjct 897 TGATGATGTGGACCATTCACGTCGATTTGAAGTGGTTAAAACGAGGGCTAATATGACAAG 956
Query 659 ATCCATCACTGAACCAATGCTTGCTGCTCATTTTGGAGACA-CCGTCATGGATCGTTTGT 717
|||||||| |||||| ||||||| ||||||||||||||| | || | || ||||| | |
Sbjct 957 ATCCATCATTGAACCGATGCTTGTTGCTCATTTTGGAGA-AGCCATTATTGATCGGCTCT 1015
Query 718 TCGACAAGTATACATATAAT-C-TAGCCCAACGTTACGATACTTTGCGCAACATACCAAC 775
| |||||||||| |||| || | | | | ||||||||||||| |||||||||| ||||||
Sbjct 1016 TTGACAAGTATATATATCATGCAT-GTC-AACGTTACGATACCTTGCGCAACAAACCAAC 1073
Query 776 GGTTCAATT-CTTTGTTTCGTTGACTAGGAAGT 807
||| |||| |||||||||||||||||||||||
Sbjct 1074 CGTT-AATTTCTTTGTTTCGTTGACTAGGAAGT 1105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40388254188
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5