BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948102
Length=631
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37900.1 | Symbols: | TRAF-like superfamily protein | chr5:... 281 4e-75
> AT5G37900.1 | Symbols: | TRAF-like superfamily protein | chr5:15093903-15094802
REVERSE LENGTH=726
Length=726
Score = 281 bits (152), Expect = 4e-75
Identities = 421/545 (77%), Gaps = 41/545 (8%)
Strand=Plus/Plus
Query 22 CAATGCAGAGTGTTCTTGAATCGATCTTGGTCCCATGCCCAAACGTCACGTTTGGTTGCA 81
||||| ||| | ||||||||||||| |||||| |||||||||||| || |||||||||||
Sbjct 146 CAATGGAGAATATTCTTGAATCGATATTGGTCACATGCCCAAACGACATGTTTGGTTGCA 205
Query 82 CAAAGAATTCCTCT-TATGGGAAAGAGTTAACTCATG-AGAAAGAATGCAACGTCGCTCC 139
| ||| || || | ||||||||| | | |||||||| || ||||||||| || |||
Sbjct 206 CCGAGAGTTTCT-TATATGGGAAAAAATCAACTCATGAAG-AAGAATGCATTTTCTCTCT 263
Query 140 ATGTTCCTGCCC-T-GTGGAAGACTGCGATTATAT-TGGCTC-ATACAAGGATCTCTACG 195
||| || ||||| | | | ||||| || || | ||| | |||| |||||||||| |
Sbjct 264 ATGCTCATGCCCTTCATTG--GACTGTGAGTA-CTCCGGC-CGATACGAGGATCTCTATG 319
Query 196 ATCACTATGATCTAACTCA-AT-T-GAA--AAGA-TTCA-CACTTGATTACTTCAGTTGT 248
|||||||| | || ||||| || | ||| | | | | ||| | | | ||| || | |
Sbjct 320 ATCACTATAAACTGACTCACATCTCGAACTCATACTGGACCAC-TAACTGCTTTAGATCT 378
Query 249 GGCAATTCC-TTTAA-TCTCCCGATGAAAATCAGCGATAAGAAGATAGTAATTAGAATGG 306
|| ||||| | ||| | ||||||| ||||||||| |||||| ||||| || ||
Sbjct 379 AGC-ATTCCATATAAGGC-CCCGATGCTTATCAGCGAT---AAGATACAAATTACAAGGG 433
Query 307 AAGA-CACGAAGAGACTCTTGTTTGCAGTGCAGTGTTTTAAGGAGCCTTGTGGTGTGTAT 365
| | | ||||| | | |||||||||||||||||||||| |||| | ||||||||||||
Sbjct 434 TATATGA-GAAGAAAATATTGTTTGCAGTGCAGTGTTTTAGGGAGTCGTGTGGTGTGTAT 492
Query 366 GTAACCGTAAGCTGCATTGCACCATTTACTCGAGAAGTAGGAGC-GTTCTCATATTATTT 424
||||||||||||||||||||||||| | ||| |||||| ||| | |||||||||| | |
Sbjct 493 GTAACCGTAAGCTGCATTGCACCATCTGCTCCAGAAGTTGGA-CAGTTCTCATATCAAAT 551
Query 425 CTCCTATGCTGTGGATGGAA-ACGTTATGAGTT-AC-GTATCAACAGAGATGAAGAGGGT 481
|||||| ||||||||| || || |||| ||| || | |||| || | |||||||||||
Sbjct 552 CTCCTACACTGTGGATG-AACACACTATG-GTTTACAG-ATCACCACAAATGAAGAGGGT 608
Query 482 TCTTGAAGTGAGTTCTCAAGTC-CCT-AAGAAGAATTTCATGTGGATACCTCACTGTTTA 539
|| | ||||||||| | || | ||| |||| ||||||||||| |||||||||| ||||
Sbjct 609 TCGTAAAGTGAGTTTTGAAA-CACCTCAAGA-GAATTTCATGTTGATACCTCACAATTTA 666
Query 540 TTGCG 544
|||||
Sbjct 667 TTGCG 671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30441893082
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5