BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948107
Length=862
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37890.1 | Symbols: | Protein with RING/U-box and TRAF-like... 468 4e-131
AT5G37910.1 | Symbols: | Protein with RING/U-box and TRAF-like... 448 6e-125
> AT5G37890.1 | Symbols: | Protein with RING/U-box and TRAF-like
domains | chr5:15090286-15091894 REVERSE LENGTH=1159
Length=1159
Score = 468 bits (253), Expect = 4e-131
Identities = 611/776 (79%), Gaps = 56/776 (7%)
Strand=Plus/Plus
Query 99 ACGATCGGCAATGC---TGGATCTTGATTTTCTTGATTG-CCCTATTTGCAT-CG-AGCC 152
||| ||| |||||| ||||||| || |||| ||||| ||| |||||| | || || |
Sbjct 186 ACGCTCGACAATGCTAATGGATCTGGAGATTCTCGATTGTCCC-ATTTGC-TACGAAG-C 242
Query 153 GTTCACTGTTCCTATCTTCCAGTGTGATAATGGACATTTAGCTTGCGCTTCTTGCTGTCC 212
||||| |||| |||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 243 TTTCACAATTCCCATCTTCCAGTGTGATAATGGACATTTGGCTTGTTCTTCTTGCTGTCC 302
Query 213 CAAACTGAGTAATAAGTGCCCTACATGTACTTTGCCTGTTGGTCACATTCGCAGCAGAGC 272
|||||| | ||| || |||||| | ||||||| ||||||||| |||| |||| |||||||
Sbjct 303 CAAACTAAATAACAAATGCCCTGCGTGTACTTCGCCTGTTGGCCACAATCGCTGCAGAGC 362
Query 273 AATGGAGAGTGTTCTTGAATCTATCTTTATCCCATGCCCGAACGCCAAGTTAGGTTGCAC 332
||||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||
Sbjct 363 AATGGAGAGTGTTCTTGAATCGATCTTGATCCCGTGTCCGAACGCCAAGTTAGGTTGCAA 422
Query 333 CACGAATGTCTCTTATGGGAAACAGTCAA-TACATGAGAAGGAATGTA-GCTTCTCTCTC 390
| |||||| |||||||||||| ||| || | ||||| |||||||| | | |||||||
Sbjct 423 AAAGAATGTATCTTATGGGAAAGAGTTAACT-CATGAAAAGGAATGCATG-TTCTCTCA- 479
Query 391 CTCTGCTCATGCCCT-CTACAAGACTGCAATTACACTAGCTCATACTCTAA-CATGTAC- 447
| ||| | |||||| | | || ||||||||||||||||||||| | | |||||
Sbjct 480 -T-TGCGCCTGCCCTGC-ATTGGATTGCAATTACACTAGCTCATACAAGGATC-TGTACA 535
Query 448 CGTCACTTTATTAGTGACC-ACCA-G-AAC-AAAT-ATATGT--T--GTTC-TGTTGTGA 497
| ||||| | || | ||| | | | || ||| | || | | |||| | ||||||
Sbjct 536 C-TCACTATCGTATT-ACCCAT-ATGGAAATAAACCAGAT-TAATACGTTCAT-TTGTGA 590
Query 498 CACTTTCGCT-AA-TGTTCGGATGAATATAAGCGATAAGATATTGATTAGAGTTGAATA- 554
|| || | || || ||| |||||||| || ||| | ||||||||||||||| ||| |
Sbjct 591 CA-TTCC-CTTAAGTGTCCGGATGAACATCAGCAAAAAGATATTGATTAGAACGGAACAC 648
Query 555 T-GAGGTAAGCCTAGTGTTTGCAGTGCAATGTTTTAAGGAGCCGTGTGGTGTCTATGTAA 613
| || | || | | ||||||||||||| ||||| | |||||||| |||||| |||||||
Sbjct 649 TTGACG-AATCATT-TGTTTGCAGTGCAGTGTTTCAGGGAGCCGTATGGTGTGTATGTAA 706
Query 614 CTGTAAGCTGCATTGCACCGTCTTTTCAAGAAGTAGGAAAATTCTCATAC-CATCTCTCC 672
|||||||||||||||| || |||| || |||| || | | | |||||| | ||||||
Sbjct 707 CTGTAAGCTGCATTGCGCCATCTTCTCCAGAATTAAGTCAGTACTCATATGC-TCTCTCT 765
Query 673 TACACTGTGGATGGGCACACTATGACTTACGAATCACCGAAAG-TGAAGAAAGTTCTTAA 731
|||||||| ||||| |||||| ||| |||| ||||||| | || |||||| ||||||||
Sbjct 766 TACACTGTCGATGGACACACTGTGATTTACCAATCACC-AGAGGTGAAGAGGGTTCTTAA 824
Query 732 AGT-GAGCTACCAAATACCTG-AAGAGAGTTTCATGTTGATCCCTCA-CAGTTTATTGCG 788
|| ||| | |||| || | |||||| |||||||||||| || || ||||||||||||
Sbjct 825 -GTTGAGTTTTCAAACCCC-GCAAGAGAATTTCATGTTGATTCC-CAACAGTTTATTGCG 881
Query 789 TGGTGAAATTTTGGATATGAAGCTTTGCATCAAGAAGTTGAGGCAA-GAGTAAGAA 843
|||||| | ||||| |||| | || || |||||||||||| ||| |||||||||
Sbjct 882 TGGTGATGTGTTGGAAATGAGGATTAGCGTCAAGAAGTTGAA-CAAAGAGTAAGAA 936
> AT5G37910.1 | Symbols: | Protein with RING/U-box and TRAF-like
domains | chr5:15096210-15097318 REVERSE LENGTH=831
Length=831
Score = 448 bits (242), Expect = 6e-125
Identities = 600/765 (78%), Gaps = 56/765 (7%)
Strand=Plus/Plus
Query 110 TGCTGGATCTTGATTTTCTTGATTGCCCTATTTGCAT-CG-AGCCGTTCACTG-TTCCTA 166
|||| ||||||||| | || ||||| ||||||||| | | || | || || | |||||
Sbjct 89 TGCTAGATCTTGATATCCTCGATTGTCCTATTTGC-TGTGAAG-CATTGAC-GAGTCCTA 145
Query 167 TCTTCCAGTGTGATAATGGACATTTAGCTTGCGCTTCTTGCTGTCCCAAACTGAGTAATA 226
||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||
Sbjct 146 TCTTCCAGTGTGATAATGGGCATTTGGCTTGCGGTTCTTGCTGTCCCAAACTGAGTAATA 205
Query 227 AGTGCCCTACATGTACTTTGCCTGTTGGTCACATTCGCAGCAGAGCAATGGAGAGTGTTC 286
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 206 AGTGCCCTGCATGTACTTTGCCTGTTGGTCACAGTCGCAGCAGAGCAATGGAGAGTGTTC 265
Query 287 TTGAATCTATCTTT-ATCCCATGCCCGAACGCCAAGTTAGGTTGCACCACGAATGTCTCT 345
|||||||||| ||| ||||||||||| |||| || ||| ||||| |||| || | ||| |
Sbjct 266 TTGAATCTAT-TTTGATCCCATGCCCAAACGTCAGGTTTGGTTGTACCAAGAGTTTCTTT 324
Query 346 TATGGGAAACAGTCAA-TACATGAGAAGGAATGTAGCTTCTCTCTCCTCTGCTCATGCCC 404
||||||||| ||||| | ||||| || ||||| | |||||||| | ||||||||||
Sbjct 325 TATGGGAAAGAGTCAGCT-CATGAAAAAGAATGCATCTTCTCTCAA-T--GCTCATGCCC 380
Query 405 TCTACAA-GA-CTGCAATTACACTAGCTCATACTCTAA-CATGTAC-CGTCACTTTATTA 460
| | || | |||| |||||||| |||||||| | | | ||| | ||||| || |
Sbjct 381 T-T-CATCGGTCTGCGATTACACTGGCTCATACAAGGATC-TCTACGC-TCACTATAA-A 435
Query 461 GTGAC-CAC-C-A-GAACAAATA-T--A-TGTT--GTTCTGT---TGTGACACTTTCGCT 507
|||| ||| | | ||| | | | | | || | || | |||| || |||| |
Sbjct 436 CTGACTCACTCCACGAATATTTTCTGGAATATTAAGCGCTTTAGATGTGCCAATTTCTTT 495
Query 508 A--ATGTTCGGATGAAT-ATAAGCGATAAGATATTGATTAGA-GTTGAATATGAG--GTA 561
| | | | ||| | || |||||||||||| | |||| | | | | ||||| | |
Sbjct 496 ACGACCTCC--ATGC-TCATCAGCGATAAGATACTAATTAAAAGG-GTACATGAGAAGAA 551
Query 562 AGCCTAGTGTTTGCAGTGCAATGTTTTAAGGAGCCGTGTGGTGTCTATGTAACTGTAAGC 621
| | || || |||||||||| ||||||| ||| ||||||||||| ||||| |||||||||
Sbjct 552 A-C-TATTGCTTGCAGTGCAGTGTTTTAGGGAACCGTGTGGTGTGTATGTGACTGTAAGC 609
Query 622 TGCATTGCACCGTCTTTTCAAGAAGTAGGAAAATTCTCATACCATCTCTCCTACACTGTG 681
| ||||||||| ||| || |||||||||| | |||||||| || |||||||||| ||||
Sbjct 610 TTCATTGCACCATCTGCTCCAGAAGTAGGAGAGTTCTCATATCAACTCTCCTACAATGTG 669
Query 682 GATGGGCACACTATGACTTACGAATCACCGAAAGTGAAGAAAGTTCT-TAAAGTGAGCTA 740
||||| |||||| ||||||| ||||| ||| | ||||||| ||| | ||||||||| ||
Sbjct 670 GATGGACACACTGTGACTTATGAATCTCCGGAGGTGAAGAGGGTT-TGTAAAGTGAG-TA 727
Query 741 CC-AAATACCTGAAGAGAGTTTCATGTTGATCCCTCACAGTTTATTGCGTGGTGAAATT- 798
||| ||| |||||| |||||||||||| ||||||||||||||||||||||| ||
Sbjct 728 TTGAAACCCCTCAAGAGAATTTCATGTTGATACCTCACAGTTTATTGCGTGGTGAC-TTG 786
Query 799 TTGGATATGAAGCTTTGCATCAA-GAAGTTGAGG-C-AAGAGTAA 840
||||| ||| || ||| |||| ||| || || | ||||||||
Sbjct 787 TTGGAGATGCAGGTTTTTATCATCGAAAATGTGGACCAAGAGTAA 831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42045981039
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5