BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948109
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79730.1 | Symbols: ELF7 | hydroxyproline-rich glycoprotein ... 316 2e-85
> AT1G79730.1 | Symbols: ELF7 | hydroxyproline-rich glycoprotein
family protein | chr1:30000538-30004005 REVERSE LENGTH=2011
Length=2011
Score = 316 bits (171), Expect = 2e-85
Identities = 191/201 (95%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 723 AGTCGCTAACTGAGAAACAAGCAAAGGAACTGCGAGAGATGAAAGGAGGCATCAACATCT 782
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 989 AGTCGCTAACGGAGAAGCAAGCAAAGGAACTGCGAGAGATGAAAGGAGGCATCAACATCT 1048
Query 783 TGCAGAATCTTAACAATAGAGAGAGACAAATCATGGATATTGAAGCATCCTTTGAGGCAT 842
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1049 TGCACAATCTTAACAATAGAGAGAGACAAATCAAGGATATTGAAGCATCCTTTGAGGCAT 1108
Query 843 GCAAGTCTCAACCAATTCATTCCACCAATAAAAACGTGCAGCCGGTTGAAGTTTTACCAC 902
||||||||| |||| ||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 1109 GCAAGTCTCGACCAGTTCATGCCACCAATAAAAACTTGCAGCCGGTTGAAGTTCTACCAC 1168
Query 903 TGTTGGCATATTTTGATAGGT 923
||||| |||||||||||||||
Sbjct 1169 TGTTGCCATATTTTGATAGGT 1189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52158366255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5