BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948115
Length=988
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22610.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 150 2e-35
AT5G22720.2 | Symbols: | F-box/RNI-like superfamily protein | ... 147 3e-34
> AT5G22610.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr5:7515217-7516916 FORWARD LENGTH=1419
Length=1419
Score = 150 bits (81), Expect = 2e-35
Identities = 300/398 (75%), Gaps = 45/398 (11%)
Strand=Plus/Plus
Query 86 ATGCTTGCACAAGCTCAAGCTAAGTATTCACCAGGATGAGAATGAGAATCACAACCAGTT 145
|||||||||||||||||||||||||||||| | | ||||||||||| | || ||
Sbjct 267 ATGCTTGCACAAGCTCAAGCTAAGTATTCA---G-A--AGAATGAGAATGAT--CC-GTC 317
Query 146 TTGTGTCACGCGT-TGGATAGATT-TCGTGGCTAAGGGAAAACTTAAGCATCTTGATGTT 203
||||||||||| | |||| ||| | | ||||||| ||| |||||| ||||||||||||||
Sbjct 318 TTGTGTCACGC-TATGGACAGACTGT-GTGGCTAGGGGTAAACTTCAGCATCTTGATGTT 375
Query 204 GAGC--GCTT-TCT-G-AA-G---CGTAAGTGTTTGG-AAGTGATCATGCCCGTAAGCCT 253
||| | | || | || | ||| ||| ||||| || |||| |||| |||||||
Sbjct 376 GAGTTTGGTGGTCGCGTAATGGAGCGTGAGT-TTTGGGAAATGAT---GCCCCTAAGCCT 431
Query 254 CTTTGTCTGTCAGACGTTAGTTTACTTAAGACTC-AGTCGCGTGTTGTTTAGTACTAGTT 312
|| | ||||| ||||| | || |||| |||||| | ||| || ||||| ||| | ||
Sbjct 432 CTATATCTGTAAGACGCTCCTTCACTTGAGACTCTA-TCGGGTATTGTTGGGTA--ACTT 488
Query 313 TTGAGGAATCGTCGTCTGTAT-CATTACCTCGTCTTAAGA-CTCTGCGTCTAGAACTCAA 370
| || | || | || || || | |||||| |||| |||| | || || ||||| ||
Sbjct 489 T-GATCAGTC-T-GT-TG-ATTCTTTACCTAGTCTCAAGAGCA-TGTGTTTAGAAGAAAA 542
Query 371 CGTATATTCAAATGAGACAAGTCTAGAGTCGCTAATCTCATATATCCC-CGTGCTTGAAG 429
|||||||| |||||| | ||||| |||||||| ||||| | | | || ||| || ||||
Sbjct 543 TGTATATTCTAATGAGGCGAGTCTGGAGTCGCTTATCTCGTCT-TGCCGCGTTCTCGAAG 601
Query 430 ATTTGACCATTGTTAGAAGAGTAGGTGATAATGTTAAG 467
||||||||||||||| | || ||| |||||| || |||
Sbjct 602 ATTTGACCATTGTTA-A-GA-TAGATGATAACGT-AAG 635
Score = 82.4 bits (44), Expect = 8e-15
Identities = 87/107 (81%), Gaps = 6/107 (6%)
Strand=Plus/Plus
Query 592 TGATTGATGCCCCTAGACTCAAGTATTTGAATATCGAAGA-TGAAAGAA-C-AACTATTA 648
|||||||||||||||||||||||||||||| | || || | ||| || | || | ||
Sbjct 659 TGATTGATGCCCCTAGACTCAAGTATTTGACTTTC-AACAATGACC-AATCGAAA-AGTA 715
Query 649 AAACCATAACCAATTTGGGTTCCTTAAACAAGGTCAATCTTCTTGGC 695
||||||||| |||||| ||||||||| ||||||| | ||||||||
Sbjct 716 AAACCATAAGCAATTTAGGTTCCTTAGTTAAGGTCACTATTCTTGGC 762
> AT5G22720.2 | Symbols: | F-box/RNI-like superfamily protein
| chr5:7547797-7551174 REVERSE LENGTH=2028
Length=2028
Score = 147 bits (79), Expect = 3e-34
Identities = 365/495 (74%), Gaps = 51/495 (10%)
Strand=Plus/Plus
Query 24 GATTTCAATGC-TTTCTCGAGTTTTGTCAACAAGTGCTTAGATTTCTCAAGAGAAAACG- 81
|||| |||||| ||| | ||| ||||| |||||| | ||| |||||| || ||| | |
Sbjct 220 GATTACAATGCTTTTGT-GAGCTTTGTGGACAAGTTCCTAGGTTTCTCTAGGGAACA-GA 277
Query 82 AGTTATGCTTGCACAAGCTCAAGCTAAGTATTCACCAGGATGAGAATGAGAATCACAACC 141
|||||||||||||||||||||||||||| |||| ||| ||||||||| ||| |
Sbjct 278 AGTTATGCTTGCACAAGCTCAAGCTAAGCATTCGTAAGGGTGAGAATGA---TCAGGA-- 332
Query 142 AGTTTTGTGTCACGCGTTGGATAGATTTCGTGGCTAAGGGAAAACTTAAGCATCTTGATG 201
|| ||||||| |||||||||||||| ||||||| | |||||||||||||||||||
Sbjct 333 --TT--GTGTCACACGTTGGATAGATTTTGTGGCTACGCCTAAACTTAAGCATCTTGATG 388
Query 202 TTGAGC--GCTT-T-CTGAAGCGTAAGTGTTTGGAAGTGATCATGCCCGTAAGCCTCTT- 256
||||| | | | | || | || ||||||| |||||||| | ||| ||||||| ||
Sbjct 389 TTGAGATTGGTCCTAC-GAGGTGTGAGTGTTTTGAAGTGAT-A--CCCTTAAGCCT-TTA 443
Query 257 T-GTCTGTCAGACGTTAGTTTACTTAAGACTCAGTCGCGTGTTGTTTAG-TACTAGTTTT 314
| | |||| || | | ||||||||||||| | || || | | || | || |||||
Sbjct 444 TAG-CTGTGAGTCACTCCTTTACTTAAGACTAAATCATGTAT-GCTTGGGTA--AGTTT- 498
Query 315 GAGGAATCGTCGTCTGTATCATTACC-TCGTCTTAAGACTCTGCGTCT-AGAACTCAACG 372
||| || | || | | | ||||| | |||| ||||| || | || ||||| |||
Sbjct 499 GAG---TC-T-GT-T-TCT--TTACCAT-GTCTCAAGACAATGAG-CTTAGAACAAAACA 547
Query 373 TATATTCAAATGAGACA-AGTCTAGAGTCGCTAATCTCATA-TA-TCCCCGTGCTTGAAG 429
||||| | || ||| | | ||||||||| || |||||| | | ||| || |||||||
Sbjct 548 TATATGCTAACGAGGCGGA-TCTAGAGTCTCTTATCTCA-ACTTGTCCT-GTTCTTGAAG 604
Query 430 ATTTGACCATTGTTAGAAGAGTAGGTGATAATGTTAA-GTATTTAAGAGTGCGTTCCCAG 488
|||||| | |||| || | | | |||||| || || || |||| |||||| || |||
Sbjct 605 ATTTGAGCTTTGTGAGTGGGGCATATGATAAAGTAAACGT-TTTACGAGTGCAATCTCAG 663
Query 489 ACACTAACCAGTCTC 503
||| |||||||||||
Sbjct 664 ACATTAACCAGTCTC 678
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48375483561
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5