BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948116

Length=228
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G47780.1 | Symbols: GAUT4 | galacturonosyltransferase 4 | ch...   239    9e-63


> AT5G47780.1 | Symbols: GAUT4 | galacturonosyltransferase 4 | 
chr5:19347919-19350669 FORWARD LENGTH=2075
Length=2075

 Score =  239 bits (129),  Expect = 9e-63
 Identities = 145/153 (95%), Gaps = 0/153 (0%)
 Strand=Plus/Plus

Query  46   TGCTATTGAAAAACTAAAAGCAATGGAGCAAACATTGGCCAAAGGCAAGCAGATCCAAGA  105
            |||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  714  TGCTATAGAAAAGCTAAAAGCAATGGAGCAAACACTGGCCAAAGGCAAGCAGATCCAAGA  773

Query  106  TGACTGTTCCACAGTGGTCAAGAAGCTACGTGCAATGCTCCACTCGGCAGAGGAGCAGCT  165
            ||||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct  774  TGACTGTTCTACAGTGGTCAAGAAGCTACGTGCTATGCTCCACTCCGCAGATGAGCAGCT  833

Query  166  ACGGGTCCATAAGAAGCAAACCATGTTCTTGAC  198
            ||||||||||||||||||||||||||| |||||
Sbjct  834  ACGGGTCCATAAGAAGCAAACCATGTTTTTGAC  866



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10254620796


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5