BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg948120 Length=1019 Score E Sequences producing significant alignments: (Bits) Value AT3G45620.2 | Symbols: | Transducin/WD40 repeat-like superfami... 584 5e-166 > AT3G45620.2 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:16745882-16748156 FORWARD LENGTH=1747 Length=1747 Score = 584 bits (316), Expect = 5e-166 Identities = 402/444 (91%), Gaps = 3/444 (1%) Strand=Plus/Plus Query 570 CAGACTGCGGTCACATATTTATATGGAAGAAGAAAGGGGGTAAAGCTTGTGCGGGCTATG 629 |||||||||||||||| |||||||||||||||||||| ||| |||||||| || |||||| Sbjct 1157 CAGACTGCGGTCACATTTTTATATGGAAGAAGAAAGGAGGT-AAGCTTGTCCGAGCTATG 1215 Query 630 GTGGGTGATAGACGAGTGGTGAATCAGCTCGAGTTTCACCCACACATACCGTTTTTTGCA 689 ||||||||||||||||||||||||||| | |||| |||||||||||||||||| ||||| Sbjct 1216 GTGGGTGATAGACGAGTGGTGAATCAGTTAGAGTCTCACCCACACATACCGTTACTTGCA 1275 Query 690 TCCTGCGGGATTGAAAAGAGCGTCAAGCTCTGGACACCATTGTCAAACGATGTTCTTTCT 749 ||||||||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||| Sbjct 1276 TCCTGCGGGATTGAAAAGAGCGTTAAGCTCTGGACGCCAATGTCAAATGATGTTCTTTCC 1335 Query 750 CTGCCTGAAAACATCGAAAAGGTGGTGGAATCGAACCGAGTGGGGAGAGAAGACCAGTCG 809 ||||||||||| ||||| |||||| |||||| |||| | ||||||||||||||||| ||| Sbjct 1336 CTGCCTGAAAAGATCGATAAGGTGATGGAATTGAACAGGGTGGGGAGAGAAGACCAATCG 1395 Query 810 AGGGTGACACTGACTCCTGATGTAATTATGCATGTTCTCCGGCTACAGAGACGTCAGACA 869 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1396 AGGGTAACACTGACTCCTGATGTAATTATGCATGTTCTTAGGCTACAGAGACGTCAGACG 1455 Query 870 TCTGCTTTTACAGAAAGAAGATACGTTTCAACTGACATCGACAGTGATGAAGGAAATGAA 929 || ||||||||||| || |||||||||||||||||||| | |||||||||||||||||| Sbjct 1456 TCGGCTTTTACAGAGAGGAGATACGTTTCAACTGACATTGGCAGTGATGAAGGAAATGAT 1515 Query 930 GCTCATTTCATTGCAAGCTTAGAAGCCAAGGACGATGAGTCTTCAGAAAGAGAATGTACT 989 |||| |||||||||||||||| |||||| ||||||||||||||||| |||||||||||| Sbjct 1516 GCTCGCTTCATTGCAAGCTTAGTAGCCAACGACGATGAGTCTTCAGACAGAGAATGTACT 1575 Query 990 GTCAGCTAAGTC-T-TCAAGTAGT 1011 || |||| |||| | |||| |||| Sbjct 1576 GTAAGCTGAGTCCTCTCAACTAGT 1599 Score = 542 bits (293), Expect = 3e-153 Identities = 325/341 (95%), Gaps = 0/341 (0%) Strand=Plus/Plus Query 69 GATGACCGGACGATCATAACATCTGGTGCTGATGGACAAGTAAGACTTGGTCAAATCCTA 128 |||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 469 GATGACAGGACAATCATAACATCTGGTGCTGATGGACAAGTAAGACTTGGTCAGATCCTA 528 Query 129 GAAAATGGTAAAGTGGAGACAAAAAGGCTAGGGAGGCACCATGGTCGTGTGTACAAGCTT 188 |||||||||||||||||||| ||||| ||||||||||| || ||||| |||||||||||| Sbjct 529 GAAAATGGTAAAGTGGAGACGAAAAGACTAGGGAGGCATCACGGTCGCGTGTACAAGCTT 588 Query 189 GCTGTTTTGCCTGGAGATCCTAATGTATTCTACAGCTGTGGTGAAGATGGTTTTGTTCAA 248 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 589 GCTGTTTTGCCTGGAGATCCTAACGTATTCTACAGCTGTGGTGAAGATGGTTTTGTTCAA 648 Query 249 CATTTTGATGTACGAAGCAACAGTGCCACTATGGTTTTGTATTCCTCTCCGTTCACACAA 308 ||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 649 CATTTTGATATACGCAGCAACAGTGCTACTATGGTTTTGTATTCCTCTCCGTTCACACAA 708 Query 309 GGCTGCAGGAGACATCACTCCAGTAGTAGGATCAGATTGAATTCTATTGCGATAGATCCA 368 || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 709 GGATGCAGGAGACATCACTCCAGCAGTAGGATCAGATTGAATTCTATTGCGATAGATCCG 768 Query 369 AGGAATTCATATTATCTTGCGGTTGGGGGTTCCGATGAATA 409 |||||||||||||||||||||||||||||||| |||||||| Sbjct 769 AGGAATTCATATTATCTTGCGGTTGGGGGTTCTGATGAATA 809 Score = 244 bits (132), Expect = 1e-63 Identities = 152/162 (94%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 411 ACCAACAGTGTTCACATCACGGGATTGGCATATTCCAAAGCTGGAGAACTACTGGTCTCT 470 |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| Sbjct 913 ACCAACAGTGTTCACATCACGGGATTAGCATATTCCAAAGCTGGAGAACTATTGGTCTCT 972 Query 471 TACAATGACGAGCTCATTTATCTGTTTGAGAAGAACATGGGTTATGGTTCGTCGCCGGTG 530 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 973 TACAACGACGAGCTTATTTATCTGTTTGAGAAGAACATGGGTTATGGTTCGTCGCCTGTT 1032 Query 531 TCTATATCTCCTGAGAATCTACAAGAAATGGAAGAACCACAG 572 ||| | ||||||||||| || ||||||||||||||||||||| Sbjct 1033 TCTGTCTCTCCTGAGAAACTGCAAGAAATGGAAGAACCACAG 1074 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49932742118 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5