BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948120
Length=1019
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45620.2 | Symbols: | Transducin/WD40 repeat-like superfami... 584 5e-166
> AT3G45620.2 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:16745882-16748156 FORWARD LENGTH=1747
Length=1747
Score = 584 bits (316), Expect = 5e-166
Identities = 402/444 (91%), Gaps = 3/444 (1%)
Strand=Plus/Plus
Query 570 CAGACTGCGGTCACATATTTATATGGAAGAAGAAAGGGGGTAAAGCTTGTGCGGGCTATG 629
|||||||||||||||| |||||||||||||||||||| ||| |||||||| || ||||||
Sbjct 1157 CAGACTGCGGTCACATTTTTATATGGAAGAAGAAAGGAGGT-AAGCTTGTCCGAGCTATG 1215
Query 630 GTGGGTGATAGACGAGTGGTGAATCAGCTCGAGTTTCACCCACACATACCGTTTTTTGCA 689
||||||||||||||||||||||||||| | |||| |||||||||||||||||| |||||
Sbjct 1216 GTGGGTGATAGACGAGTGGTGAATCAGTTAGAGTCTCACCCACACATACCGTTACTTGCA 1275
Query 690 TCCTGCGGGATTGAAAAGAGCGTCAAGCTCTGGACACCATTGTCAAACGATGTTCTTTCT 749
||||||||||||||||||||||| ||||||||||| ||| ||||||| |||||||||||
Sbjct 1276 TCCTGCGGGATTGAAAAGAGCGTTAAGCTCTGGACGCCAATGTCAAATGATGTTCTTTCC 1335
Query 750 CTGCCTGAAAACATCGAAAAGGTGGTGGAATCGAACCGAGTGGGGAGAGAAGACCAGTCG 809
||||||||||| ||||| |||||| |||||| |||| | ||||||||||||||||| |||
Sbjct 1336 CTGCCTGAAAAGATCGATAAGGTGATGGAATTGAACAGGGTGGGGAGAGAAGACCAATCG 1395
Query 810 AGGGTGACACTGACTCCTGATGTAATTATGCATGTTCTCCGGCTACAGAGACGTCAGACA 869
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1396 AGGGTAACACTGACTCCTGATGTAATTATGCATGTTCTTAGGCTACAGAGACGTCAGACG 1455
Query 870 TCTGCTTTTACAGAAAGAAGATACGTTTCAACTGACATCGACAGTGATGAAGGAAATGAA 929
|| ||||||||||| || |||||||||||||||||||| | ||||||||||||||||||
Sbjct 1456 TCGGCTTTTACAGAGAGGAGATACGTTTCAACTGACATTGGCAGTGATGAAGGAAATGAT 1515
Query 930 GCTCATTTCATTGCAAGCTTAGAAGCCAAGGACGATGAGTCTTCAGAAAGAGAATGTACT 989
|||| |||||||||||||||| |||||| ||||||||||||||||| ||||||||||||
Sbjct 1516 GCTCGCTTCATTGCAAGCTTAGTAGCCAACGACGATGAGTCTTCAGACAGAGAATGTACT 1575
Query 990 GTCAGCTAAGTC-T-TCAAGTAGT 1011
|| |||| |||| | |||| ||||
Sbjct 1576 GTAAGCTGAGTCCTCTCAACTAGT 1599
Score = 542 bits (293), Expect = 3e-153
Identities = 325/341 (95%), Gaps = 0/341 (0%)
Strand=Plus/Plus
Query 69 GATGACCGGACGATCATAACATCTGGTGCTGATGGACAAGTAAGACTTGGTCAAATCCTA 128
|||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 469 GATGACAGGACAATCATAACATCTGGTGCTGATGGACAAGTAAGACTTGGTCAGATCCTA 528
Query 129 GAAAATGGTAAAGTGGAGACAAAAAGGCTAGGGAGGCACCATGGTCGTGTGTACAAGCTT 188
|||||||||||||||||||| ||||| ||||||||||| || ||||| ||||||||||||
Sbjct 529 GAAAATGGTAAAGTGGAGACGAAAAGACTAGGGAGGCATCACGGTCGCGTGTACAAGCTT 588
Query 189 GCTGTTTTGCCTGGAGATCCTAATGTATTCTACAGCTGTGGTGAAGATGGTTTTGTTCAA 248
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 589 GCTGTTTTGCCTGGAGATCCTAACGTATTCTACAGCTGTGGTGAAGATGGTTTTGTTCAA 648
Query 249 CATTTTGATGTACGAAGCAACAGTGCCACTATGGTTTTGTATTCCTCTCCGTTCACACAA 308
||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 649 CATTTTGATATACGCAGCAACAGTGCTACTATGGTTTTGTATTCCTCTCCGTTCACACAA 708
Query 309 GGCTGCAGGAGACATCACTCCAGTAGTAGGATCAGATTGAATTCTATTGCGATAGATCCA 368
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 709 GGATGCAGGAGACATCACTCCAGCAGTAGGATCAGATTGAATTCTATTGCGATAGATCCG 768
Query 369 AGGAATTCATATTATCTTGCGGTTGGGGGTTCCGATGAATA 409
|||||||||||||||||||||||||||||||| ||||||||
Sbjct 769 AGGAATTCATATTATCTTGCGGTTGGGGGTTCTGATGAATA 809
Score = 244 bits (132), Expect = 1e-63
Identities = 152/162 (94%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 411 ACCAACAGTGTTCACATCACGGGATTGGCATATTCCAAAGCTGGAGAACTACTGGTCTCT 470
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 913 ACCAACAGTGTTCACATCACGGGATTAGCATATTCCAAAGCTGGAGAACTATTGGTCTCT 972
Query 471 TACAATGACGAGCTCATTTATCTGTTTGAGAAGAACATGGGTTATGGTTCGTCGCCGGTG 530
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 973 TACAACGACGAGCTTATTTATCTGTTTGAGAAGAACATGGGTTATGGTTCGTCGCCTGTT 1032
Query 531 TCTATATCTCCTGAGAATCTACAAGAAATGGAAGAACCACAG 572
||| | ||||||||||| || |||||||||||||||||||||
Sbjct 1033 TCTGTCTCTCCTGAGAAACTGCAAGAAATGGAAGAACCACAG 1074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49932742118
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5