BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948121
Length=698
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45630.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) fami... 828 0.0
> AT3G45630.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr3:16748174-16753833 REVERSE LENGTH=3555
Length=3555
Score = 828 bits (448), Expect = 0.0
Identities = 587/655 (90%), Gaps = 5/655 (1%)
Strand=Plus/Plus
Query 29 GTTACCTCC-CCCTGGTTTCTCTTCACATGAACGAGCCGACCTGTCTTCTGATATTGCAC 87
||||||||| ||| ||||||||||||||| || ||| ||||||||||||||||||||||
Sbjct 2416 GTTACCTCCTCCC-GGTTTCTCTTCACATCAAAGAGGCGACCTGTCTTCTGATATTGCAT 2474
Query 88 CAGGGACTCGCTTGCTTGACTCGGCCTCCTTGTTGAGGAACACATATCATGTCCCACCTC 147
|||| ||||| || |||||||| ||| |||||||||||| |||||||||| |||||||
Sbjct 2475 CAGGAACTCGTTTACTTGACTCAGCCAATTTGTTGAGGAACGCATATCATGTACCACCTC 2534
Query 148 CAAGTGGCAATTTGACCGCCGCAGCAGATATTGAGTTTATTGATCCTGCAATTTTAGCTG 207
||||||| ||||||| || |||| |||||||||||||||||||||||||||||||||||
Sbjct 2535 CAAGTGGAAATTTGAATGCTGCAGGAGATATTGAGTTTATTGATCCTGCAATTTTAGCTG 2594
Query 208 TTGGAAGGGGAAGACTTCACAGTGGGATGGAAACAGCAGATTTTGATATGAGATCAGGGT 267
||||||||||||||||||| | |||||||||||||||||| |||||| ||||||||||||
Sbjct 2595 TTGGAAGGGGAAGACTTCATAATGGGATGGAAACAGCAGACTTTGATTTGAGATCAGGGT 2654
Query 268 TCTCTTCTCAGTTGAATTCCTTTGAAAACGATGCAAGACTTCAATTGTTGGCGCAGAGGT 327
|||||||||| ||||||| ||||| || ||||||||||| |||||||||||||||||||
Sbjct 2655 TCTCTTCTCAACTGAATTCATTTGATAATGATGCAAGACTCCAATTGTTGGCGCAGAGGT 2714
Query 328 CTCTGGCTGCACAACAAGTCAATGGATTTCATGTTCTCATGAACGTTAACAACTTTTCTT 387
||||||||||||||||||||||||||||||| | || || |||||| |||||||| ||||
Sbjct 2715 CTCTGGCTGCACAACAAGTCAATGGATTTCACGATCCCAGGAACGTAAACAACTTCTCTT 2774
Query 388 CTCCACTCTCTGACCCATATGGAATTAGTTCCAGGCTAATGGATCAAACACAAGGAACTG 447
|| | |||||||||||||||| ||||| || |||| || ||||||||||||||||||||
Sbjct 2775 CTTCGTTCTCTGACCCATATGGGATTAGCTCGAGGCCAACGGATCAAACACAAGGAACTG 2834
Query 448 GCTTATCTCCTTTCACACAATTACCTAGACAAGCTTCACCAAATCCGTTGTTGTCAAATG 507
|||| |||||||||||||| | ||||||||||||||| ||||||| |||||||||||||
Sbjct 2835 GCTTGTCTCCTTTCACACAGCTGCCTAGACAAGCTTCAGCAAATCCATTGTTGTCAAATG 2894
Query 508 GACACTGGGATAA---GTGGAATGAAACTCAAAGTGGTAACAATCTTGGGACCAACCAGC 564
||||||||||||| |||||||||| | |||||||||||||||||||||| | |||||
Sbjct 2895 GACACTGGGATAATAAGTGGAATGAACCACAAAGTGGTAACAATCTTGGGATTACCCAGC 2954
Query 565 TTCTAAGGAATGACCGGATGGGATTTAATGACAATGTCTACAGCCGTTTTGAAGAGCCTA 624
||||||||||||| |||||||| ||||||||||| || |||||| |||||||||||||||
Sbjct 2955 TTCTAAGGAATGAACGGATGGGTTTTAATGACAACGTTTACAGCGGTTTTGAAGAGCCTA 3014
Query 625 AGTTCCGGAGGCCCGGTCCTGGAGATCAGTACAACAGAACTTATGGGATTTGATT 679
| ||||||||||||||||||||||||| ||| |||||||| || |||||||||||
Sbjct 3015 AATTCCGGAGGCCCGGTCCTGGAGATCCGTATAACAGAACATACGGGATTTGATT 3069
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33807580931
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5