BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948136
Length=616
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47640.1 | Symbols: NF-YB2 | nuclear factor Y, subunit B2 | ... 1002 0.0
> AT5G47640.1 | Symbols: NF-YB2 | nuclear factor Y, subunit B2
| chr5:19309227-19310272 FORWARD LENGTH=1046
Length=1046
Score = 1002 bits (542), Expect = 0.0
Identities = 596/621 (96%), Gaps = 7/621 (1%)
Strand=Plus/Plus
Query 2 ATTTCTTGTAATTATCAGAAATGGGGGATTCCGACAGAGATTCCGGTGGAGGGCAAAACG 61
||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 168 ATTCCTTGTAATTTTCAGAAATGGGGGATTCCGACAGGGATTCCGGTGGAGGGCAAAACG 227
Query 62 GGAATAATCC-CAACGGACAGTCCTCCTTGTCTCCAAGAGAGCAAGACAGGTTCTTGCCG 120
|||| || || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 GGAACAA-CCAGAACGGACAGTCCTCCTTGTCTCCAAGAGAGCAAGACAGGTTCTTGCCG 286
Query 121 ATCGCTAACGTCAGCCGGATTATGAAGAAGGCCTTGCCCGCTAACGCCAAGATCTCCAAA 180
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 287 ATCGCTAACGTCAGCCGGATCATGAAGAAGGCCTTGCCCGCCAACGCCAAGATCTCTAAA 346
Query 181 GATGCCAAAGAGACGATGCAGGAGTGTGTCTCCGAGTTCATAAGCTTCGTCACCGGAGAG 240
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 347 GATGCCAAAGAGACGATGCAGGAGTGTGTCTCCGAGTTCATCAGCTTCGTCACCGGAGAA 406
Query 241 GCATCGGATAAGTGTCAGAAGGAGAAGAGGAAGACGATCAACGGCGACGATTTGCTCTGG 300
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 407 GCATCTGATAAGTGTCAGAAGGAGAAGAGGAAGACGATCAACGGAGACGATTTGCTCTGG 466
Query 301 GCTATGACCACTCTAGGGTTTGAGGATTATGTTGAGCCATTGAAAGTTTACTTGCAGAGG 360
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 GCTATGACTACTCTAGGTTTTGAGGATTATGTTGAGCCATTGAAAGTTTACTTGCAGAGG 526
Query 361 TTTAGGGAGATCGAAGGGGAGAGGACTGGACTGGGGAGGCCACAGACTGGTGCTGAGGTC 420
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 527 TTTAGGGAGATCGAAGGGGAGAGGACTGGACTAGGGAGGCCACAGACTGGTGGTGAGGTC 586
Query 421 GGAGAGCATCAGAGAGATGCTGTCGGCGATGGCGCTGGGTTCTAC---GGTGGTGGTGGG 477
|||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||
Sbjct 587 GGAGAGCATCAGAGAGATGCTGTCGGAGATGGCGGTGGGTTCTACGGTGGTGGTGGTGGG 646
Query 478 ATGCAGTATCACCAACATCATCAGTTTCTTCACCAGCAGAACCATATGTATGGAGCCACA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 ATGCAGTATCACCAACATCATCAGTTTCTTCACCAGCAGAACCATATGTATGGAGCCACA 706
Query 538 GGTGGCGGTAGCGACAGTGGAGGTGGAGCTGCCTCCGGTAGGACAAGGACTTAA-AA-GA 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 707 GGTGGCGGTAGCGACAGTGGAGGTGGAGCTGCCTCCGGTAGGACAAGGACTTAACAAAGA 766
Query 596 TTGGTGAAGTGGATCTCTCTC 616
|||||||||||||||||||||
Sbjct 767 TTGGTGAAGTGGATCTCTCTC 787
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29688380877
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5