BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948141
Length=775
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47590.1 | Symbols: | Heat shock protein HSP20/alpha crysta... 695 0.0
> AT5G47590.1 | Symbols: | Heat shock protein HSP20/alpha crystallin
family | chr5:19297817-19299152 REVERSE LENGTH=976
Length=976
Score = 695 bits (376), Expect = 0.0
Identities = 611/718 (85%), Gaps = 41/718 (6%)
Strand=Plus/Plus
Query 34 AGGGATTCTACGCGACGAACAATCAGTTCCAGACAA-CGGGTCCAAAGGGTTTCATTGAA 92
|||| ||||||||||||||||||||||| |||| || ||||||||||||||||| || ||
Sbjct 109 AGGGGTTCTACGCGACGAACAATCAGTTTCAGA-AAGCGGGTCCAAAGGGTTTCGTTCAA 167
Query 93 GTGAAGGTTCTGGAGAACGACAATCTCTATGTGCGTGTCGACTTGCCTGGTGTTCCAGAC 152
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 168 GTGAAGGTTCTGGAGAACGACAATCTCTACGTGCGTGTCGACTTGCCTGGTGTTCCAGAC 227
Query 153 GACGCCGTTCGCTACAGAGTTGACGCGGTGAGACAAAAGGTTGTGTTTTTCTCCGGTGAA 212
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 228 GACGCCGTTCGCTACAGAGTTGACGCCGTGAGACAAAAGGTTGTCTTTTTCTCCGGTGAA 287
Query 213 ACTCTCAACGACGATAAGGAAGGCT-TGCGTGAGTACTCTGGAACCGCCGGTCTTGGATG 271
||||| ||| ||| |||||||| | ||||| |||||||||||||||| || ||||| ||
Sbjct 288 ACTCTGAACAACGGCAAGGAAGG-TGTGCGTCAGTACTCTGGAACCGCTGGGCTTGGCTG 346
Query 272 TGACTGCTGCGAGATCACAGGCGTCGTTGATGCCAAAATGAAAGATGGAGTTTTGAGGAT 331
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 347 TGACTGCTGCGAGATCACAGGCGT-G--GATGCCAAAATGAAAGATGGAGTTTTGAGGAT 403
Query 332 GATTCTTACAAGGGTCAAGGT-GA-A-CAAGGATCAA--C--C--CAACAACAAGTGTAC 382
|||||| |||||||||||||| | | ||||| |||| | | |||||||||||||||
Sbjct 404 GATTCTCACAAGGGTCAAGGTTGTGAGCAAGGCTCAAGACAACAACAACAACAAGTGTAC 463
Query 383 TCTCACTGTGCCTCCTTTCACAGGTCAATCCGGAAGATATCT-GGAGGATCATCCATATG 441
|||||||||||||||||| |||||||||||||||| | || |||||||||||| | |
Sbjct 464 TCTCACTGTGCCTCCTTTTACAGGTCAATCCGGAATACG-CTTGGAGGATCATCCGTGTC 522
Query 442 TGGTGAAAGGTCGCAAGGGAGCATTGTTTGGGGT-ACCAACCGCGGG-GATAGGG-CTTT 498
||||| ||||||||||||||| | ||||||| || || ||||| | |||| ||
Sbjct 523 TGGTGTCTGGTCGCAAGGGAGCACTAATTGGGGTGACAAAA-GCGGGAGG-AGGGGCTC- 579
Query 499 ACTTTGCAGTAGACTTGCCAGGTGTTTGTGGGGATGATGTACAAGTGTTTGCTCATGAAA 558
|||||||||| ||| ||||||||||| || ||||||||| |||||| |||| ||||||
Sbjct 580 ACTTTGCAGTGGACATGCCAGGTGTTAGTCCGGATGATGTGGAAGTGTATGCTGATGAAA 639
Query 559 ATGAAATCAGATTCTATGGTGA-AGTCAAGAACGTGTGTGAGCACGATGAGAGCCGTCGA 617
| |||||||||||| | | ||| | ||||| |||||| ||| |||||||||||| |||||
Sbjct 640 AGGAAATCAGATTCAAAGCTGAGA-TCAAGGACGTGTATGAACACGATGAGAGCGGTCGA 698
Query 618 ATCTAC-TCGGGAGGCATC-ATGAGTCCTCCTTCCCGTATTCTACCTTCAGTTTCGAGCC 675
| |||| |||| || | || | |||||| |||||| || || | |||||| |
Sbjct 699 ACCTACCTCGGAAG-CGTCCAA-AGTCCTT-TTCCCGC-TT-TA-----A-TTTCGAACA 747
Query 676 ACAACATCACTTGGGATGTAGAATTTGGTGTTCTCAAGATTGTTG-CTACACCTCCTG 732
||| |||| ||||||||| ||||||||||||||||| ||||| || | | ||||||||
Sbjct 748 ACACCATCGCTTGGGATGCAGAATTTGGTGTTCTCAGGATTGCTGTC-ATACCTCCTG 804
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37675610250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5