BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948159
Length=1771
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47460.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2604 0.0
> AT5G47460.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:19252463-19254193 REVERSE LENGTH=1731
Length=1731
Score = 2604 bits (1410), Expect = 0.0
Identities = 1623/1726 (94%), Gaps = 14/1726 (1%)
Strand=Plus/Plus
Query 21 ATGCTAAGAACTGTGTCAAATGCTTTT-CCGACAAGGAGCCATGTTGGTTCCACTGCCTA 79
||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct 1 ATGCTAAGAACTGTGTCAAATGCTTTTACC-ACAAGGAGCCATGTTGGTTCCACTGCGTC 59
Query 80 TTCGAACTCATGGACCACCATTGTTCCTGCTCTGGCTCGGTTCGGTTCCATCGGCGTATT 139
|||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 60 TTCGAACTCATGGAGCACCATCGTTCCTGCTCTGGCTCGTTTCGGTTCCATCGGCGTATT 119
Query 140 ACGCGCTGCAGTTGAATTGATCAATGACGGCGAAAAGCCAGGTGCTTCTCCACTTGTTCA 199
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 120 ACGCGCTGCCGTTGAATTGATCAATGACGGCGAAAAGCCAGATGCTTCTCCACTTGTTCA 179
Query 200 CTTGCTCCGTGTCTCCGGGAATTATGGCTACGTTTCTTTGTGTCGACAGCTTCATGGCTA 259
||||||||||||||| || ||||||||||||||||||||||||||||||||||| || ||
Sbjct 180 CTTGCTCCGTGTCTCTGGCAATTATGGCTACGTTTCTTTGTGTCGACAGCTTCACGGTTA 239
Query 260 CGTCGTAAAACATGGGTTTGTCTCAAATACGCGTCTTTCCAATTCGTTAATGAGGTTTTA 319
|||| ||||||||||||||||||||||||||||||||| |||||| | |||||||||||
Sbjct 240 CGTCACAAAACATGGGTTTGTCTCAAATACGCGTCTTTCTAATTCGCTGATGAGGTTTTA 299
Query 320 CAAGACAAGCGACTCGTTGGAAGATGCTCACAAACTGTTTGATGAAATGCCTGACCCAGA 379
||||||||| ||||| || ||||||||||||||| |||||||||||||||||||||||||
Sbjct 300 CAAGACAAGTGACTCATTAGAAGATGCTCACAAAGTGTTTGATGAAATGCCTGACCCAGA 359
Query 380 TGTCATTTCTTGGAACTCATTGGTTTCTGGTTACGTTCAATCAGGAAGGTTCCAGGAAGG 439
|||||| || ||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 360 TGTCATATCGTGGAACTCATTGGTTTCTGGTTATGTTCAATCGGGAAGGTTCCAGGAAGG 419
Query 440 ACTCTGTTTGTTTCTCAAGCTCCACAGATCTTATGTTTTGCCTAACGAGTTCTCTTTTAC 499
| | ||||||||||| |||| || |||||| |||| || |||||||| |||||||| ||
Sbjct 420 AATTTGTTTGTTTCTTGAGCTTCATAGATCTGATGTCTTCCCTAACGAATTCTCTTTCAC 479
Query 500 AGCCGCTTTAGCTGCTTGTGCGA-GACTGCATCTCTGGCCACTCGGAGCTTGCATCCATT 558
||||||||||||||||||||| | || ||||||||| ||| ||||||||||||||||| |
Sbjct 480 AGCCGCTTTAGCTGCTTGTGC-ACGATTGCATCTCTCGCCTCTCGGAGCTTGCATCCACT 538
Query 559 CCAAGATTGTGAAACTTGGCTTAGAGAAAGGCAATGTTGTTGTGGGTAATTGTCTAATTG 618
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CCAAGCTTGTGAAACTAGGCTTAGAGAAAGGCAATGTTGTTGTGGGTAATTGTCTAATTG 598
Query 619 ACATGTACGGGAAATGTGCTTCCATGGATGATGCAGTTTTGGTCTTCCAACACATGGAAG 678
|||||||||||||||||| || ||||||||||| |||||||| ||||||||||||||||
Sbjct 599 ACATGTACGGGAAATGTGGTTTTATGGATGATGCTGTTTTGGTATTCCAACACATGGAAG 658
Query 679 AAAAGGACACAGTTTCTTGGAATGCCATTGTTGCTTCCTGCTCAAGGAACGGTAAGCTCG 738
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 659 AAAAGGACACAGTTTCTTGGAATGCAATTGTTGCTTCCTGCTCAAGGAACGGTAAGCTCG 718
Query 739 AGCTGGGACTTTGGTTTTTCCACCAAATGCCAAATCCAGACACTGTAACATACAACGAGC 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AGCTGGGACTTTGGTTTTTCCACCAAATGCCAAATCCAGACACTGTAACATACAACGAGC 778
Query 799 TCATCTATGCTTTCGTCAAGTCTGGAGATTTCAATAATGCCTTTCAGGTTCTATTAGATA 858
||||| |||||||||||||||| || |||||||||||||||||||||||||||| ||||
Sbjct 779 TCATCGATGCTTTCGTCAAGTCCGGGGATTTCAATAATGCCTTTCAGGTTCTATCGGATA 838
Query 859 TGCCAAATCGAAATTCGTCTTCATGGAACACAATATTGACCGGCTATGTAAACAGTGAGC 918
|||| |||| ||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 839 TGCCGAATCCTAATTCATCTTCATGGAACACAATATTGACCGGTTATGTCAACAGTGAGA 898
Query 919 AATCAGGAGAAGCTACTGAGTTTTTCACCAAAATGCATTCATCGGGAGTTGGATTGGATG 978
||||||| |||||||||||||||||||||||||||||||| || || || |||| ||||
Sbjct 899 AATCAGGGGAAGCTACTGAGTTTTTCACCAAAATGCATTCGTCAGGTGTCAGATTCGATG 958
Query 979 AGTACAG-CTTGTCAATAGTTCTAGCCACCATTGCTGCTCTCGCTGTGGTTCCATGGGGG 1037
||||||| || |||||||||||| ||| || |||||||||||||||||||||||||||||
Sbjct 959 AGTACAGTCT-GTCAATAGTTCTGGCCGCCGTTGCTGCTCTCGCTGTGGTTCCATGGGGG 1017
Query 1038 AGTCTCATCCATGCTTGTGCTC-TCAAGCTTGGCCTAGACTCTCGAGTTGTTGTCGCGAG 1096
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1018 AGTCTCATCCATGCTTGTGCTCAT-AAGCTTGGCCTAGACTCTCGAGTTGTTGTCGCGAG 1076
Query 1097 TGCTCTGATAGATATGTATTCCAAATGCGGAATGTTGAAGCATGCTGAGCTGATGTTTTG 1156
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1077 TGCTCTGATAGATATGTATTCCAAATGCGGAATGTTGAAGCACGCTGAGCTGATGTTTTG 1136
Query 1157 GACAATGCCTAGAAAGAATCTGATTATGTGGAACGCGATGATCTCTGGATATGCCCGTAA 1216
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1137 GACAATGCCTAGAAAGAATCTGATTGTGTGGAACGAGATGATCTCTGGATATGCCCGTAA 1196
Query 1217 TGGCGATTCAATCGAGGCGATCAAGCTCTTTAACCAATTGAAACAAGAAAGGTTCATGAA 1276
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1197 TGGCGATTCAATCGAGGCGATCAAGCTCTTTAACCAACTGAAACAAGAAAGGTTCCTGAA 1256
Query 1277 ACCTGATCGATTCACGTTCTTGAATCTCTTAGCTGTGTGTTCTCATTGTGAAGTTCCAAT 1336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 ACCTGATCGATTCACGTTCTTGAATCTCTTAGCTGTGTGTTCTCATTGTGAAGTTCCAAT 1316
Query 1337 GGAAGTCATGCTTGGATACTTTGAGATGATGATTAACGAGTATGGAATCAAACCAAGCGT 1396
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1317 GGAAGTCATGCTTGGATACTTTGAGATGATGATCAACGAGTATAGAATCAAACCAAGCGT 1376
Query 1397 AGAGCATTGCTGTTCTATCATCAGAGCTATGGGGCAGAGAGGAGAGGTTTGGCAGGCAAA 1456
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 AGAGCATTGCTGTTCTCTTATCAGAGCTATGGGGCAGAGAGGAGAGGTTTGGCAGGCAAA 1436
Query 1457 AAAGGTGATTCAAGAATTCGGTTTTGGGTATGATGGTGTGGCTTGGAGGGCGTTACTTGG 1516
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 ACAGGTTATTCAAGAATTCGGTTTTGGGTATGATGGTGTGGCTTGGAGGGCGTTACTTGG 1496
Query 1517 TGCTTGCAGTGCTCGCAAGGATCTGAAAGCTGCGAAAACCGTCGCCGCAAAGATGATTGA 1576
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1497 TGCTTGCAGTGCTCGCAAGGATCTGAAAGCTGCGAAAACCGTTGCCGCTAAGATGATTGA 1556
Query 1577 ATTAGGGGAAGCTGATAAAGATGAGTATGTATACATAGTGATGTCGAATCTCTATGCTTA 1636
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1557 ATTAGGGGATGCTGATAAAGATGAGTATTTATACATAGTGATGTCGAATCTCTATGCTTA 1616
Query 1637 CCATGAGAGATGGAGGGAAGTTAGTCAAATTAGGAAGATAATGAGAGAAAAAGGGGTAAC 1696
||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||| |
Sbjct 1617 CCATGAGAGATGGAGAGAAGTTGGTCAAATTAGGAAGATAATGAGAGAAAGTGGGGTA-C 1675
Query 1697 -GAAAGAAGTCGGGTCTAGCTGGATT----CAAGAGCAAAATGTAG 1737
||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1676 TGAAAGAAGTCGGGTCTAGCTGGATTGATTCAAGAACAAAATGTAG 1721
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87599951025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5