BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948169
Length=1209
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47390.1 | Symbols: | myb-like transcription factor family ... 1986 0.0
AT1G70000.1 | Symbols: | myb-like transcription factor family ... 117 3e-25
> AT5G47390.1 | Symbols: | myb-like transcription factor family
protein | chr5:19226790-19228858 FORWARD LENGTH=1621
Length=1621
Score = 1986 bits (1075), Expect = 0.0
Identities = 1165/1209 (96%), Gaps = 3/1209 (0%)
Strand=Plus/Plus
Query 1 TGCTTCTTCTGCGATCAGCTAAGATCCGATCCACGACCGTTTCAGACTCCGATCAGATCC 60
||||||||||||||||| |||||||||||||| ||| ||||||||||| |||||||||||
Sbjct 125 TGCTTCTTCTGCGATCAACTAAGATCCGATCCGCGAGCGTTTCAGACTTCGATCAGATCC 184
Query 61 GATTAAGATAAGCAAATCGGGTCGGGTATGACTCGTCGATGTTCTCACTGCAATCACAAT 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 GATTAAGAGAAGCAAATCGGGTCGGGTATGACTCGTCGATGTTCTCACTGCAATCACAAT 244
Query 121 GGCCACAACTCTCGGACTTGTCCCAATCGCGGCGTGAAGCTCTTTGGTGTTAGGCTCACC 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 245 GGCCACAACTCTCGGACTTGTCCCAATCGCGGCGTGAAGCTCTTTGGTGTTCGGCTCACC 304
Query 181 GAAGGTTCGATCCGGAAAAGTGCAAGTATGGGTAATCTTAGTCATTACACGGGTTCTGGA 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 305 GAAGGTTCGATCCGGAAAAGTGCAAGTATGGGTAATCTTAGCCATTACACGGGTTCTGGA 364
Query 241 TCGGGTGGGCATGGAACCGGGTCCAATACTCCGGGTTCTCCGGGTGATGTCCCTGACCAT 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 365 TCGGGTGGGCATGGAACCGGGTCCAACACTCCGGGTTCTCCGGGTGATGTCCCTGACCAT 424
Query 301 GTCGCTGGTGATGGTTACGCTTCTGAAGATTTCGTTGCTGGCTCTTCCTCTAGCCGCGAG 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 425 GTCGCTGGTGATGGTTACGCTTCTGAGGATTTCGTTGCTGGCTCTTCCTCTAGCCGCGAG 484
Query 361 AGAAAGAAAGGAACTCCATGGACAGAGGAAGAACATAGGATGTTCTTATTAGGTTTACAG 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 485 AGAAAGAAAGGAACTCCATGGACAGAGGAAGAACACAGGATGTTCTTATTAGGTTTACAG 544
Query 421 AAGCTGGGTAAAGGTGATTGGAGAGGTATCTCAAGAAACTATGTGACCACTAGGACACCA 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 AAGCTGGGTAAAGGTGATTGGAGAGGTATCTCAAGAAACTATGTGACCACTAGGACACCT 604
Query 481 ACACAAGTTGCTAGCCATGCTCAGAAGTATTTCATCAGACAATCCAATGTGTCTCGTCGC 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 605 ACACAAGTTGCTAGCCATGCTCAGAAGTATTTCATCAGACAATCCAATGTCTCTCGTCGC 664
Query 541 AAAAGACGTTCTAGTCTCTTTGATATGGTCCCTGATGAGGTTGGCGATATTCCCATGGAT 600
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 665 AAAAGACGTTCTAGTCTCTTTGATATGGTTCCTGATGAGGTTGGAGATATTCCCATGGAT 724
Query 601 TTGCAAGAACCAGAAGCAGATAACATTCCTGTGGAAACTGAAATCCAAGGTGCTGACTCT 660
|||||||||||||| | |||||| |||||||||||||||||||| |||||||||||||||
Sbjct 725 TTGCAAGAACCAGAGGAAGATAATATTCCTGTGGAAACTGAAATGCAAGGTGCTGACTCT 784
Query 661 GTTCATCAGACACTTGCTCCGGGCTCACTTCAAGCACCGTCGATCTTGGAAATCGAAGAA 720
||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||
Sbjct 785 ATTCATCAGACACTTGCTCCTAGCTCACTTCACGCACCGTCAATCTTGGAAATCGAAGAA 844
Query 721 TGTGAATCAATGGACTCCACAAACTCTACCACCGGGGAACCAACTGCAACCGCTGCTGCT 780
|||||||||||||||||||||||||||||||||||||||||||| ||||| || | |||
Sbjct 845 TGTGAATCAATGGACTCCACAAACTCTACCACCGGGGAACCAACCGCAACTGC--C-GCT 901
Query 781 GCTGCTTCTTCTTCTTCCAGACTAGAAGAAACCACACAACTGCAATCACAACTGCAACCG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 GCTGCTTCTTCTTCTTCCAGACTAGAAGAAACCACACAACTGCAATCACAACTGCAACCG 961
Query 841 CAACCGCAACTACCTGGCTCATTCCCCATACTATATCCGACCTACTTCTCACCGTATTAC 900
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 962 CAGCCGCAACTACCTGGCTCATTCCCCATACTATATCCGACCTACTTTTCACCATATTAC 1021
Query 901 CCGTTTCCATTCCCAATATGGCCTGCTGGTTATGTTCCTGAACCACCCAAGAAAGAGGAA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 CCGTTTCCATTCCCAATATGGCCTGCTGGTTATGTTCCTGAACCACCCAAGAAAGAGGAA 1081
Query 961 ACTCATGAGATCCTCAGACCAACTGCGGTGCACTCGAAAGCTCCTATCAATGTTGACGAA 1020
|||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1082 ACTCATGAAATTCTCAGACCAACTGCTGTGCACTCGAAAGCTCCTATCAATGTTGACGAG 1141
Query 1021 CTTCTCGGTATGTCTAAGCTCAGCCTTGCAGAGTCCAACAAAAATGGAGAATCCGATCAG 1080
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1142 CTTCTTGGTATGTCTAAGCTCAGCCTTGCAGAGTCCAACAAACATGGAGAATCCGATCAG 1201
Query 1081 TCTCTTTCGCTGAAGCTAGGTGGTGGGTCATCGTCAAGACAGTCAGCATTTCACCCGAAT 1140
|||||||| ||||||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 1202 TCTCTTTCATTGAAGCTAGGTGGCGGGTCATCTTCAAGACAATCAGCATTTCACCCGAAT 1261
Query 1141 CCTAGCTCTGATAGTTCGGACATCAAAAGCGTGATACACGCTTTATAAAAGACCTGAGGA 1200
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 CCTAGCTCTGATAGTTCAGACATCAAAAGCGTGATACACGCTTTATAAAAGACCTGAGGA 1321
Query 1201 AGTGACGGT 1209
||||| |||
Sbjct 1322 AGTGATGGT 1330
> AT1G70000.1 | Symbols: | myb-like transcription factor family
protein | chr1:26363278-26364699 REVERSE LENGTH=1246
Length=1246
Score = 117 bits (63), Expect = 3e-25
Identities = 120/147 (82%), Gaps = 6/147 (4%)
Strand=Plus/Plus
Query 369 AGGAACTCCATGGACAGAGGAAGAACATAGGAT-GTT-CTTATTAGGTTTACAGAA-GCT 425
|||||||||||||||||||||||||||||| || ||| |||| | || || || || | |
Sbjct 352 AGGAACTCCATGGACAGAGGAAGAACATAG-ATTGTTTCTTACT-GGATTGCATAAAGTT 409
Query 426 GGGTAAAGGTGATTGGAGAGGTATCTCAAGAAACTATGTGACCACTAGGACACCAACACA 485
|| ||||||||||||||||| ||||| ||||||| ||| | ||| | ||||| || ||
Sbjct 410 GGA-AAAGGTGATTGGAGAGGAATCTCTAGAAACTTTGTTAAAACTCGAACACCTACTCA 468
Query 486 AGTTGCTAGCCATGCTCAGAAGTATTT 512
|| || || ||||||||||| |||||
Sbjct 469 GGTAGCGAGTCATGCTCAGAAATATTT 495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59387244735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5