BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948172
Length=1479
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47360.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2139 0.0
> AT5G47360.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:19214445-19215878 REVERSE LENGTH=1434
Length=1434
Score = 2139 bits (1158), Expect = 0.0
Identities = 1347/1439 (94%), Gaps = 10/1439 (1%)
Strand=Plus/Plus
Query 22 ATGCTAAA-TCACTTGATTTCTCGTCTGTTGCCTCCTTCATTACTATCTCATCCCTCAAA 80
|||| ||| ||| ||||||||||||||| | |||||||||||| |||||| ||||||||
Sbjct 1 ATGCCAAATTCA-TTGATTTCTCGTCTGGTATCTCCTTCATTACGATCTCAGCCCTCAAA 59
Query 81 AATCTCAGCTTTACGGTTTTCCACAACTGTCTCAGCCGCCGATAGATTATACGGCCATCT 140
||||||||||||||| |||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 60 AATCTCAGCTTTACGTTTTTTAACAACTGTCTCAGCCGCCGAGAGATTATACGGCCAGCT 119
Query 141 TCAAGGAGGCACAAGCAATCCCGAGAAGGATTTAGCCTCAGCTAATGTA-AATTTGGACT 199
||||||| ||||||| |||| |||||| || ||||| || ||||||||| || || ||||
Sbjct 120 TCAAGGATGCACAAGTAATCTCGAGAAAGAATTAGCTTCGGCTAATGTACAA-TTAGACT 178
Query 200 CCTCTTCTATCAACGAGGTAATAAAAAGATGCGATCCAAATCAATTTCAATTGGGTCTTA 259
|||||| ||||||||||||| ||| |||||||||||||||||||||||||| ||||||||
Sbjct 179 CCTCTTGTATCAACGAGGTACTAAGAAGATGCGATCCAAATCAATTTCAATCGGGTCTTA 238
Query 260 GGTTTTTCATATGGGCAGGAACTCAATCCAGCCATAGACACAGTCCTTACATGTATACCA 319
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 239 GGTTTTTCATATGGGCAGGAACTCTATCCAGCCATAGACACAGTGCTTACATGTATACCA 298
Query 320 AAGCTTGCGACTTTCTTAAGATTAGAGCAAACCCAGATTTGATCAAAGACGTTGTTGAAG 379
||||||||||| ||||||||||||||||||| ||||||||||||||| ||||| |||||
Sbjct 299 AAGCTTGCGACATTCTTAAGATTAGAGCAAAGCCAGATTTGATCAAATACGTTATTGAAT 358
Query 380 CTTATAAGAAAGAAGAATGCTTTGTTAGTGTTAAGACGATGAGGATTGTTTTGACTCTGT 439
||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 359 CTTATCGGAAAGAAGAATGCTTTGTTAATGTTAAGACGATGAGGATTGTTCTGACTCTGT 418
Query 440 GTAATCAAGCGAGA-CTTGCTGATGAGGCATTGTGGGTATTAAGGAAGTTTCCTGAATTC 498
|||||||||||| | || |||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GTAATCAAGCGA-ATCTCGCTGATGAGGCATTGTGGGTATTAAGGAAGTTTCCTGAATTT 477
Query 499 GATTTATGCGCAGACACTGTTGCGTATAATTTGGTGATTAGGTTGTTTGCTGATAAAGGA 558
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 478 AATGTATGTGCAGACACTGTTGCGTATAATTTGGTGATTAGGTTGTTTGCTGATAAGGGA 537
Query 559 GATTTGAGTATGGCTGATATGTTGATGAAAGAGATGGATTGTGTTGGTCTTTATCCAGAT 618
||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 538 GATTTGAATATAGCTGATATGTTGATAAAAGAGATGGATTGTGTTGGTCTTTATCCAGAT 597
Query 619 GTGATTACTTATACGTCGATGATCAATGGGTATTGCAATGCGGGTAAGATTGATGAAGCT 678
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 598 GTGATTACTTATACGTCGATGATCAATGGGTATTGCAATGCGGGTAAGATTGATGACGCT 657
Query 679 TGGAGGTTAGCTAAGGAGATGAGTAAGCACGATTGCGTGCTTAACACTGTGACGTATTCG 738
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 658 TGGAGGTTAGCTAAGGAGATGAGTAAGCATGATTGCGTGCTTAACAGTGTGACGTATTCT 717
Query 739 AGGATTCTGGAAGGAGTTTGCAAGTCTGGTGATATGGAGACAGTGTTAGAGTTGTTGGAG 798
|||||||| ||||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 718 AGGATTCTTGAAGGAGTTTGCAAGTCTGGTGATATGGAGAGAGCGTTAGAGTTGTTGGCG 777
Query 799 GTA-ATGGAGAAAGAAGACGGTGGTGGATTGATTAGTCCGAATGCGGTTACTTATACTTT 857
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 G-AGATGGAGAAAGAAGACGGTGGTGGATTGATTAGTCCGAATGCGGTTACTTATACTTT 836
Query 858 GGTAATTCAAGCGTTTTGTGAGAAAAAGCGGATTAG-AGAGGCATTGTTGGTATTGGATA 916
||| |||||||||||||||||||| | | || || | |||||| ||||||||||||||||
Sbjct 837 GGTGATTCAAGCGTTTTGTGAGAAGAGGAGGGTT-GAAGAGGCGTTGTTGGTATTGGATA 895
Query 917 GAATGGGGGATCGAGGATGCACGCCGAATCGTGTTACTGCTAGTGTTTTGATTCAGGGGG 976
||||||| | ||||| |||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 896 GAATGGGAAACCGAGGGTGCATGCCGAATCGTGTTACTGCTTGTGTTTTGATTCAGGGGG 955
Query 977 TTTTGGAGAATGATGAGGATGTTAAGGATCTTTCTAAGTTGATTGATAAGTTGGTGAAAC 1036
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 956 TTTTGGAGAATGATGAGGATGTGAAGGCTCTTTCTAAGTTGATTGATAAGTTGGTGAAAC 1015
Query 1037 TCGGCGGTGTTTCTCTTTCTGAATGTTTTAGTTCGGCTACTGTGTCGCTGATCCGTATGA 1096
| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1016 TAGGCGGTGTTTCTCTTTCTGAGTGTTTTAGTTCGGCTACTGTGTCGCTAATCCGTATGA 1075
Query 1097 AAAGATGGGAAGAGGCGGAAAAGATTTTCCGTCTGATGTTGGTCCGCGGGATTAGACCTG 1156
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1076 AAAGATGGGAAGAGGCTGAAAAGATTTTCCGTCTGATGTTGGTCCGCGGGGTTAGACCTG 1135
Query 1157 ATGGTCTTGCGTGCAGTCATGTTTTCAGGGAGTTGTGTTTGTCGGAAAGGTATCTTGATT 1216
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||
Sbjct 1136 ATGGTCTTGCGTGCAGTCATGTTTTCAGGGAGTTATGTTTGTTGGAAAGGTATCTCGATT 1195
Query 1217 GTTTCGTTCTGTATCAAGAAATCGAGAAGGAGGATGTGAAATCAACGATGGACTCGGATA 1276
||||| ||||||||||||||||||||||| |||||||||||||||| || ||||||||||
Sbjct 1196 GTTTCCTTCTGTATCAAGAAATCGAGAAGAAGGATGTGAAATCAACAATAGACTCGGATA 1255
Query 1277 TATATGCGGTTCTTTTGCTCGGTCTCTGCCATCATGGGAATTCTTGGGAAGCTGCTAAGC 1336
|| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1256 TACATGCGGTTCTTTTGCTCGGTCTCTGCCAACAGGGGAATTCTTGGGAAGCTGCTAAGC 1315
Query 1337 TTGCGAAATCAATGCTTGATAAGAAAATGAGATTGAAAGTTTCTCATGTTGAGAAAATCA 1396
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 TTGCGAAATCAATGCTTGACAAGAAAATGAGATTGAAAGTTTCTCATGTTGAGAAAATCA 1375
Query 1397 TTGAAGCCTTGAAGAAAACTGGTGATGAAGATCTCATGAGTCGTTTCTCTACTGATTAA 1455
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1376 TTGAAGCCTTGAAGAAAACTGGTGATGAAGATCTCATGAGTCGTTTCTCTATTGATTAA 1434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72941391885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5