BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948180
Length=1498
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47250.1 | Symbols: | LRR and NB-ARC domains-containing dis... 2401 0.0
> AT5G47250.1 | Symbols: | LRR and NB-ARC domains-containing disease
resistance protein | chr5:19185794-19188745 REVERSE LENGTH=2952
Length=2952
Score = 2401 bits (1300), Expect = 0.0
Identities = 1429/1492 (96%), Gaps = 6/1492 (0%)
Strand=Plus/Plus
Query 1 TTGAAGTAATCAGAAAGACTATGGCATCTAAATCTACTGTGATTCAATGGCGTCGTGCAC 60
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1224 TTGAAGTTATAAGAAAGACTATGGCATCTAAATCTACTGTGATTCAATGGCGTCGTGCAC 1283
Query 61 TCGATACTTTGGAGTCTTATCCGAGTGAGATGAAAGGTACAGAGAAGGGCATATTTCAAG 120
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1284 TCGATACTTTGGAGTCTTATCGGAGTGAGATGAAAGGTACAGAGAAGGGAATATTTCAAG 1343
Query 121 TTTTGAAGTTGAGCTATGATTATTTAG-AAACAAAAAATGCCAAGTGTTTTCTGTATTGT 179
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1344 TTTTGAAGTTGAGCTATGATTATTT-GAAAACAAAAAATGCCAAGTGTTTTCTGTATTGT 1402
Query 180 GCTTTATTTCCCAAGGCATATTATATCAAACAAGATGAGCTGGTAGAGTATTGGATAGGT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1403 GCTTTATTTCCCAAGGCATATTATATCAAACAAGATGAGCTGGTAGAGTATTGGATAGGT 1462
Query 240 GAGGGTTTCATCGATGAAAAAGACGGAAGAGGGAGAGCAAAGGATCGATGCTATGAGATC 299
||||||||||| ||||||||||||||||||| ||||||||| |||||| |||||||||||
Sbjct 1463 GAGGGTTTCATAGATGAAAAAGACGGAAGAGAGAGAGCAAAAGATCGAGGCTATGAGATC 1522
Query 300 ATCGATCATCTTGTTGGGGCAGGTTTGTTATTGGAGTCTAATAAGAAAGTGTATATGCAT 359
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1523 ATCGATAATCTTGTTGGGGCAGGTTTGTTATTAGAGTCTAATAAGAAAGTGTATATGCAT 1582
Query 360 GATATGATCCGTGAGATGGCATTGTGGATAGTATCTGAATTTCGGGATGGAGAAAGATTT 419
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1583 GATATGATCCGTGATATGGCATTGTGGATAGTATCTGAATTTAGGGATGGAGAAAGATAT 1642
Query 420 GTTGTGAAAACAGATGCTGGTTTAAGCCAACTGCCTGATGTCACGGATTGGACAACCGTG 479
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1643 GTTGTGAAAACAGATGCTGGTTTAAGCCAACTGCCTGATGTCACCGATTGGACAACTGTG 1702
Query 480 ACAAAGATGTCTCTCATCAACAATGAGATTAAGAACATACCAGACGATCCTGAATTTCCT 539
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 ACAAAGATGTCTCTGTTCAACAATGAGATTAAGAACATACCAGACGATCCTGAATTTCCT 1762
Query 540 GACCAGACAAATCTTGTGACCTTGTTCCTTCAAAATAACAAGCTGGTAGATATTGTTGGT 599
||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||
Sbjct 1763 GACCAGACAAATCTTGTAACCTTGTTCCTTCAAAATAACAGGTTGGTAGATATTGTTGGT 1822
Query 600 AGATTCTTTCAGGTCCTGTCGACTCTGGTGGTTTTGGATCTATCTTGGAACCTCCAAATC 659
| |||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1823 AAATTCTTTCTGGTCATGTCGACTCTGGTGGTTTTGGATCTATCTTGGAACTTCCAAATC 1882
Query 660 ACCGAGTTGCCAAAAGGAATTTCGGAGTTGGTTTCTTTGCGGCTTCTCAACTTATCAGGG 719
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1883 ACCGAGTTGCCAAAAGGAATCTCGGCGTTGGTTTCTTTGCGGCTTCTCAACTTATCAGGG 1942
Query 720 ACGAGTATAAAGAATCTGCCGGAAGGTTTAAGAGTCTTGAGTAAATTGATTCACTTGAAT 779
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1943 ACGAGTATAAAGCATCTGCCGGAAGGTTTAGGAGTCTTGAGTAAATTGATTCACTTGAAT 2002
Query 780 TTGGAGTCCACTTCCAATCTTCGAAACGTCGGTCTGATTTCAGAATTACAAAAGTTGCAG 839
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2003 TTGGAGTCCACTTCCAATCTTCGAAGCGTCGGTCTGATTTCAGAATTACAAAAGTTGCAG 2062
Query 840 GTTCTAAGATTTTATGGTTCTGCTGCTGCATTAGATTCCTGCTTGCTGAAGATCTTGGAG 899
||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 2063 GTTCTCAGATTTTATGGTTCTGCTGCTGCATTAGATTGCTGCTTGCTCAAGATCTTGGAG 2122
Query 900 CAGTTGAAGGGTCTACAACTTTTGACCGTTACTGTGAACAACGATTCTGTTTTGGAAGAG 959
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2123 CAGTTGAAGGGTTTACAACTTTTGACCGTTACTGTGAATAACGATTCTGTTTTGGAAGAG 2182
Query 960 TTTTTAGGAAGCACAAGATTGGCAGGGATGACTCAGGGTCTATATCTCGAAGGACTTAAA 1019
||| |||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||
Sbjct 2183 TTTCTAGGAAGCACAAGATTGGCAGGGATGACGCAGGGTATATATCTAGAAGGACTTAAA 2242
Query 1020 GTACCATTTGCAGCCGTTGGTGA-GTTGAGTAGTCTTCACAAACTTGAACTAGTAAACTG 1078
||| ||||||||||| ||||| | |||||||||||| |||||||||||| | ||||||||
Sbjct 2243 GTATCATTTGCAGCCATTGGT-ACGTTGAGTAGTCTCCACAAACTTGAAATGGTAAACTG 2301
Query 1079 CGATATCACAGAGTCAGGAACAGAATGGGAAGGCAAAAGGAGAGACCAGTATTCTCCATC 1138
||||||||||||||| ||||||||||||||||| || || ||||||||||||||||||||
Sbjct 2302 CGATATCACAGAGTCGGGAACAGAATGGGAAGGTAAGAGAAGAGACCAGTATTCTCCATC 2361
Query 1139 CACATCATCCAGTCAAATCACTCCAAGCAATCCATGGTTCAAGGATCTCTCAGCTGTGGT 1198
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2362 CACATCATCCAGTGAAATCACTCCAAGCAATCCATGGTTCAAGGATCTCTCAGCTGTGGT 2421
Query 1199 AATAAACTCATGTATACATCTAAAGGATCTGACATGGCTGATTTATGCTGCAAATCTTGA 1258
|||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||| ||
Sbjct 2422 AATAAACTCATGCATACATCTAAAGGATTTGACATGGCTGATGTATGCTGCAAATCTCGA 2481
Query 1259 GTCTCTAAGCGTAGAATCCTCGCCTAAGATGACAGAATTAATAAACAAAGAGAAAGCTGC 1318
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2482 GTCTCTAAGCGTGGAATCCTCGCCTAAGATGACAGAATTAATAAACAAAGAGAAAGCT-C 2540
Query 1319 ATG-TGTTGGGATTGATCCTTTTCAAGAGCTACAAGTCCTTCGTCTACATTATTTGAAGG 1377
| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2541 AAGGTGTTGGGGTTGATCCTTTTCAAGAGCTACAAGTCCTTCGTCTACATTATTTGAAGG 2600
Query 1378 AACTAGGAAGTATCTATGGGAGTCAAGTCTCTTTTCCAAAACTGAAGCTGAACAAAGTCG 1437
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2601 AACTAGGAAGCATCTATGGGAGTCAAGTCTCTTTTCCAAAACTGAAGCTGAACAAAGTCG 2660
Query 1438 ATATAGAAAACTGCCCGAATCTTCATCAACGTCCATTGTAAGAAAATCGATG 1489
||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2661 ATATAGAAAACTGCCCGAATCTTCATCAACGTCCATTATAAGAAAATCGATG 2712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73895202240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5