BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948195

Length=665
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G22340.1 | Symbols:  | unknown protein; Has 56 Blast hits to...   206    3e-52


> AT2G22340.1 | Symbols:  | unknown protein; Has 56 Blast hits 
to 38 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:9492879-9493955 REVERSE LENGTH=1077
Length=1077

 Score =  206 bits (111),  Expect = 3e-52
 Identities = 149/167 (89%), Gaps = 4/167 (2%)
 Strand=Plus/Plus

Query  170  TGTCCTTCTTTATAGAAGGTTTGTTTCCGGTGCG-TTCGCTCAGTGCCGGTGGAATTACC  228
            |||| ||||| |||||| |||||||||||||| | || | ||| ||||||||||||| ||
Sbjct  225  TGTCTTTCTTCATAGAAAGTTTGTTTCCGGTGTGCTT-GTTCATTGCCGGTGGAATTTCC  283

Query  229  GGTTATCAATCGGTGATTGTCCTCTTACCCAATGGTATGGAAGTTT-TACATGGGTTTTT  287
            || ||| || |||||| ||| ||||||||||||||||||| ||||| |||||||||||||
Sbjct  284  GGCTATTAACCGGTGAATGTACTCTTACCCAATGGTATGG-AGTTTCTACATGGGTTTTT  342

Query  288  GATCCCGGAATCAATGGAGGAATCAATCTACTTGACAGAATCAGAAT  334
            |||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct  343  GATCCCGGAATCAATGGAGGAATCAATCTACTTGATGGAATCAGAAT  389



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32149854080


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5