BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948196
Length=467
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22340.1 | Symbols: | unknown protein; Has 56 Blast hits to... 416 9e-116
AT2G03291.1 | Symbols: | Pseudogene of AT2G22340; unknown prot... 398 3e-110
> AT2G22340.1 | Symbols: | unknown protein; Has 56 Blast hits
to 38 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr2:9492879-9493955 REVERSE LENGTH=1077
Length=1077
Score = 416 bits (225), Expect = 9e-116
Identities = 382/455 (84%), Gaps = 22/455 (5%)
Strand=Plus/Plus
Query 3 AAACAAGTCACGAGCGTGATGGGAAGGAAGATGGTGAT-GGGTGATTGTGATGGTGATGT 61
||| ||| |||||||||||||||| ||||||||| | |||| |||||| |||||||
Sbjct 634 AAAGAAGACACGAGCGTGATGGGACGGAAGATGG-CCTCAAGTGACTGTGATAGTGATGT 692
Query 62 TCTTTATTTCCCTTGGTCGAAAAATATT-GCTTTTATAAAAAGG-GAAATCACAGCT-AC 118
||| | |||| ||| || | ||||| || || || ||||| ||||||| || | ||
Sbjct 693 TCTCTCTTTCTCTTTGTTGGAAAAT-TTAACTGCAAT-GAAAGGAGAAATCA-AGATCAC 749
Query 119 TAACCGGCAACGATGCGTAAGGCGTCTCGAGCATATCGTATTGAGTTTCAAAAGACAAGA 178
|| ||||||||||||| ||| || || |||||||| ||||||||||||||||||||||
Sbjct 750 AAATAGGCAACGATGCGTTAGGTGTTTCCAGCATATCATATTGAGTTTCAAAAGACAAGA 809
Query 179 ATTAGAATCATTTCAAGCAACAATT-AAGTTTCTTCTTTTAATC-AGAGTAATGCGAAAA 236
| |||||||| ||||||||||||| | |||| ||||||||| | | |||||||||||||
Sbjct 810 AGCAGAATCATATCAAGCAACAATTCAGGTTT-TTCTTTTAA-CTAAAGTAATGCGAAAA 867
Query 237 GCATTTTGGAGTTTCATTTATAAGATGATAGCCAATAACGAGTATGTGAAGGAGGGACGT 296
||||||||||||||||| |||| | ||||||||||| | |||||||| ||||||||||||
Sbjct 868 GCATTTTGGAGTTTCATCTATATGGTGATAGCCAATTATGAGTATGTAAAGGAGGGACGT 927
Query 297 AACAGATTTTATCTGTTAGCCTGTAAGGCTTCCGAAAGG-ATAGCAGGGTCACTTCCACT 355
||||||||||||||||||||||||||||||||||| || | |||| ||||| |||||||
Sbjct 928 AACAGATTTTATCTGTTAGCCTGTAAGGCTTCCGATCGGCA-AGCATGGTCAATTCCACT 986
Query 356 -CTTTCATCGAAATTGTGT-TCAATTTCCTCTATTTGTGTCAACGGTTGTATGTGAATGG 413
|||| ||||||||||| | |||||||| | |||||||||||| |||||||| ||| |||
Sbjct 987 TCTTT-ATCGAAATTGT-TATCAATTTCTTTTATTTGTGTCAATGGTTGTATATGAGTGG 1044
Query 414 TTCATGTAT-TGTGTAAAA-TTCTTTATGATATAA 446
|| || ||| | ||||||| || ||||||||||||
Sbjct 1045 TTTATATATCT-TGTAAAACTT-TTTATGATATAA 1077
> AT2G03291.1 | Symbols: | Pseudogene of AT2G22340; unknown protein
| chr2:1000729-1001741 REVERSE LENGTH=1013
Length=1013
Score = 398 bits (215), Expect = 3e-110
Identities = 378/454 (83%), Gaps = 21/454 (5%)
Strand=Plus/Plus
Query 3 AAACAAGTCACGAGCGTGATGGGAAGGAAGATGGTGAT-GGGTGATTGTGATGGTGATGT 61
||| ||| ||||||||||| |||||||||||||| | |||| ||||| |||||||
Sbjct 571 AAAGAAGACACGAGCGTGACGGGAAGGAAGATGG-CCTCAAGTGACCGTGATAGTGATGT 629
Query 62 TCTTTATTTCCCTTGGTCGAAAAATATT-GCTTTTATAAAAAGG-GAAATCACAGCT-AC 118
||| | |||| || ||| | ||||| || || || ||||| ||||||| || | ||
Sbjct 630 TCTCTCTTTCTCTGGGTTGGAAAAT-TTAACTGCAAT-GAAAGGAGAAATCA-AGATCAC 686
Query 119 TAACCGGCAACGATGCGTAAGGCGTCTCGAGCATATCGTATTGAGTTTCAAAAGACAAGA 178
|| ||||||||||||| ||| || || |||||||| ||| ||||||||||||||||||
Sbjct 687 AAATAGGCAACGATGCGTTAGGTGTTTCCAGCATATCATATGGAGTTTCAAAAGACAAGA 746
Query 179 ATTAGAATCATTTCAAGCAACAATT-AAGTTTCTTCTTTTAATC-AGAGTAATGCGAAAA 236
| |||||||| ||||||||||||| | |||| ||||||||| | | |||||||||||||
Sbjct 747 AGCAGAATCATATCAAGCAACAATTCAGGTTT-TTCTTTTAA-CTAAAGTAATGCGAAAA 804
Query 237 GCATTTTGGAGTTTCATTTATAAGATGATAGCCAATAACGAGTATGTGAAGGAGGGACGT 296
| ||||||||||||||| |||| | ||||||||||| |||||||||| ||||||||||||
Sbjct 805 GTATTTTGGAGTTTCATCTATATGGTGATAGCCAATTACGAGTATGTAAAGGAGGGACGT 864
Query 297 AACAGATTTTATCTGTTAGCCTGTAAGGCTTCCGAAAGG-ATAGCAGGGTCACTTCCACT 355
|||||| |||||||||||||||||||||||||||| || | |||| ||||| |||||||
Sbjct 865 AACAGA-TTTATCTGTTAGCCTGTAAGGCTTCCGATCGGCA-AGCATGGTCAATTCCACT 922
Query 356 -CTTTCATCGAAATTGTGTTCAATTTCCTCTATTTGTGTCAACGGTTGTATGTGAATGGT 414
|||| ||||||||||| ||||||||| | |||||||||||| |||||||| ||| ||||
Sbjct 923 TCTTT-ATCGAAATTGTTTTCAATTTCTTTTATTTGTGTCAATGGTTGTATATGAGTGGT 981
Query 415 TCATGTAT-TGTGTAAAA-TTCTTTATGATATAA 446
| || ||| | ||||||| || |||||||| |||
Sbjct 982 TTATATATCT-TGTAAAACTT-TTTATGATGTAA 1013
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22203492974
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5