BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948204
Length=838
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47110.1 | Symbols: LIL3:2 | Chlorophyll A-B binding family ... 1033 0.0
AT4G17600.1 | Symbols: LIL3:1 | Chlorophyll A-B binding family ... 508 3e-143
> AT5G47110.1 | Symbols: LIL3:2 | Chlorophyll A-B binding family
protein | chr5:19133986-19135317 REVERSE LENGTH=1088
Length=1088
Score = 1033 bits (559), Expect = 0.0
Identities = 764/854 (89%), Gaps = 50/854 (6%)
Strand=Plus/Plus
Query 1 GAGAGAGATCTCT-TCAAGAAAAATGTCAATATCCATGGCGTTATTCTCTCCACCGA--- 56
||||||||||| | ||| ||||||||| ||||||||||||||||||||||| ||||
Sbjct 59 GAGAGAGATCT-TAACAA-AAAAATGTCTATATCCATGGCGTTATTCTCTCCGCCGATCT 116
Query 57 -----T-ACTTCAAAACCCTAATCTCATCCCCAAGATCTCATCTTCTCTCCTCTCCACCA 110
| |||||| ||||||||||||||||||||||||||| | ||||| ||||||||||
Sbjct 117 CTTCCTCACTTCAGAACCCTAATCTCATCCCCAAGATCTCAACCTCTCTTCTCTCCACCA 176
Query 111 AGCGTTTCTCTCTCATCTACGTCCCTCGAGCTTCCTCCGACAATGGTACGACTTCACCAA 170
||||||||||||| |||| ||||||| |||||||||||||||||||||||||||| ||
Sbjct 177 AGCGTTTCTCTCTAATCTCCGTCCCTAGAGCTTCCTCCGACAATGGTACGACTTC-CC-- 233
Query 171 CGTCTGCTTCAGTCTCGGCAACCACCGTCGTGGAGATTCCGAAGCCTG-TGGCTGTGGCT 229
| | | | | || || | | | |||||||||||| | ||||||||
Sbjct 234 C--C-G-T-C-GT---GG-A------G------A--TTCCGAAGCCTGCTT-CTGTGGCT 268
Query 230 GTAGAGGAAGTTCCGGTTAAATCTCC-G--GAAAGCTCCTCCGCTTCTGGAAACGGCGCC 286
|||||||||||||| ||||||||||| | ||||||||||||||||||| ||||||||||
Sbjct 269 GTAGAGGAAGTTCCAGTTAAATCTCCAGCCGAAAGCTCCTCCGCTTCTGAAAACGGCGCC 328
Query 287 GTTGGAGGTGAAGAGACTGATTTGGGTACTGCTGAGACGGTAATCAAATTTGAAGA-TGC 345
||||||||||||| |||||||| | |||||| ||||||||||||||| | | || |||
Sbjct 329 GTTGGAGGTGAAGCGACTGATTCGAGTACTG---AGACGGTAATCAAATATCA-GAATGC 384
Query 346 GAAGTGGGTTAATGGAACTTGGGATCTGAAACAGTTCGAGAAAGATGGGAAAACAGATTG 405
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 385 GAAGTGGGTTAATGGAACTTGGGATCTGAAACAGTTCGAGAAAGATGGCAAAACTGATTG 444
Query 406 GGATTCTGTTATCGTTTCTGAGGCAAAGAGGAGAAAATGGCTTGAAGATAACCCGGAAAC 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GGATTCTGTTATCGTTTCTGAGGCAAAGAGGAGAAAATGGCTTGAAGATAACCCGGAAAC 504
Query 466 GACTAGTAACGACGAGCCTGTACTCTTCGATACCTCGATTATTCCATGGTGGGCATGGAT 525
|| ||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||
Sbjct 505 AACGAGTAACGACGAGCTTGTTGTCTTCGATACTTCGATTATTCCATGGTGGGCATGGAT 564
Query 526 GAAGAGATACCATCTACCCGAAGCCGAACTTCTCAATGGTCGTGCTGCGATGATAGGGTT 585
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 565 GAAGAGATACCATCTACCTGAAGCTGAACTTCTCAATGGTCGTGCTGCGATGATAGGGTT 624
Query 586 CTTCATGGCTTACTTTGTTGATAGCCTTACCGGAGTAGGACTTGTTGATCAAATGGGGAA 645
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 625 CTTCATGGCTTACTTTGTTGATAGTCTTACCGGAGTAGGACTTGTTGATCAAATGGGAAA 684
Query 646 TTTCTTCTGCAAAACACTCTTGTTTGTGGCTGTAGCCGGAGTTCTTTTTATCCGCAAGAA 705
|||||||||||||||||||||||||||||||||||| |||||||| || ||||| |||||
Sbjct 685 TTTCTTCTGCAAAACACTCTTGTTTGTGGCTGTAGCTGGAGTTCTCTTCATCCGTAAGAA 744
Query 706 CGAAGATTTAGACAAACTTAAGGATCTGTTTGATGAGACAACGTTATATGACAAACAATG 765
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 745 TGAAGATTTAGACAAACTTAAGGATCTGTTCGATGAGACTACGTTATATGACAAACAATG 804
Query 766 GCAAGCAGCGTGGAAAGAGCCAGATTCATCAACAGTTTCTTCAAAGAAGTGAACAAGTTT 825
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 GCAAGCTGCATGGAAAGAGCCAGATTCATCAACAGTTTCTTCAAAGAAGTGAACAAGTTC 864
Query 826 TTACA-TCTTTCAT 838
||||| ||||||||
Sbjct 865 TTACAATCTTTCAT 878
> AT4G17600.1 | Symbols: LIL3:1 | Chlorophyll A-B binding family
protein | chr4:9803705-9804872 FORWARD LENGTH=1001
Length=1001
Score = 508 bits (275), Expect = 3e-143
Identities = 398/457 (87%), Gaps = 10/457 (2%)
Strand=Plus/Plus
Query 330 TCAAATTTGAAGATGCGAAG-TGGGTTAATGGAACTTGGGATCTGAAACAGTTCGAGAAA 388
||||||| | |||||| || ||| |||||||||||||||||||||||||||||||||||
Sbjct 353 TCAAATTCCAGGATGCG-AGATGGATTAATGGAACTTGGGATCTGAAACAGTTCGAGAAA 411
Query 389 GATGGGAAAACAGATTGGGATTCTGTTATCGTTTCTGAGGCAAAGAGGAGAAAATGGCTT 448
||||| ||||| |||||||||||||| |||||| ||||||||||||| |||||||||||
Sbjct 412 GATGGAAAAACCGATTGGGATTCTGTAATCGTTGCTGAGGCAAAGAGAAGAAAATGGCTA 471
Query 449 GAAGATAACCCGGAAACGACTAGTAACGACGAGCCTGTACTCTTCGATACCTCGATTATT 508
||||| || || ||||| || ||||||||||| || || || |||||||| |||||||||
Sbjct 472 GAAGAGAATCCAGAAACAACGAGTAACGACGAACCAGTGCTTTTCGATACATCGATTATT 531
Query 509 CCATGGTGGGCATGGATGAAGAGATACCATC-TACCCGAAGCCGAACTTC-TCAATGGTC 566
||||||||||| ||||| ||||||||||| | |||| ||||| |||| || | |||||||
Sbjct 532 CCATGGTGGGCTTGGATTAAGAGATACCA-CTTACCTGAAGCTGAAC-TCTTAAATGGTC 589
Query 567 GTGCTGCGATGATAGGGTTCTTCATGGCTTACTTTGTTGATAGCCTTACCGGAGTAGGAC 626
|||| ||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 590 GTGCGGCGATGATAGGATTCTTTATGGCTTACTTTGTCGATAGTCTTACCGGAGTAGGAC 649
Query 627 TTGTTGATCAAATGGGGAATTTCTTCTGCAAAACACTCTTGTTTGTGGCTGTAGCCGGAG 686
||||||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||
Sbjct 650 TTGTTGATCAAATGGGGAATTTCTTCTGCAAGACACTATTGTTTGTGGCTGTGGCTGGAG 709
Query 687 TTCTT-TTTATCCGCAAGAACGAAGATTTAGACAAACTTAAGGATCT-GTTTGATGAGAC 744
|| || ||||| || ||||| || ||| | || ||||| ||| | || ||||||||||||
Sbjct 710 TT-TTGTTTATTCGTAAGAATGAGGATGTGGATAAACTCAAGAA-CTTGTTTGATGAGAC 767
Query 745 AACGTTATATGACAAACAATGGCAAGCAGCGTGGAAA 781
|| || ||||| || |||||||||||||| ||||||
Sbjct 768 TACATTGTATGATAAGCAATGGCAAGCAGCTTGGAAA 804
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40840361511
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5