BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948205
Length=682
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47100.1 | Symbols: CBL9, ATCBL9 | calcineurin B-like protei... 1107 0.0
AT4G17615.1 | Symbols: CBL1, ATCBL1, SCABP5 | calcineurin B-lik... 676 0.0
> AT5G47100.1 | Symbols: CBL9, ATCBL9 | calcineurin B-like protein
9 | chr5:19129640-19132283 REVERSE LENGTH=1223
Length=1223
Score = 1107 bits (599), Expect = 0.0
Identities = 657/685 (96%), Gaps = 3/685 (0%)
Strand=Plus/Plus
Query 1 GTTTTA--CTTGTCATCTGTAAATGGGTTGTTTCCATTCCACGGCTGCGAGAGAATTTCC 58
|||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 304 GTTTTACTCTTGTCATCCGTAAATGGGTTGTTTCCATTCCACGGCTGCCAGAGAATTTCC 363
Query 59 TGGTCACGAGAACCCTGTGAAGCTAGCTTCTGAGACTGCTTTTAGTGTTAGTGAAGTTGA 118
| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 364 CGATCACGAAAACCCTGTGAAGCTTGCTTCTGAGACTGCTTTTAGTGTTAGTGAAGTTGA 423
Query 119 AGCATTGTATGAATTGTTCAAGAGCATAAGCAGCTCGGTTGTTGACGATGGCTTGATAAA 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 AGCATTGTATGAATTGTTCAAGAGCATAAGCAGCTCGGTTGTTGACGATGGCTTGATAAA 483
Query 179 CAAGGAAGAGTTTCAACTTGCTTTGTTCAAGAACAGAAAGAAGGAAAATTTGTTTGCCAA 238
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 484 CAAGGAAGAGTTTCAACTTGCTTTGTTCAAGAACAGAAAGAAAGAAAATTTGTTTGCCAA 543
Query 239 TAGGATATTTGATTTGTTTGATGTTAAACGAAAAGGCGTCATTGATTTTGGAGACTTTGT 298
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 544 TAGGATATTTGATTTATTTGATGTTAAACGAAAAGGCGTAATTGATTTTGGAGACTTTGT 603
Query 299 GAGATCACTCAATGTTTTCCATCCTAATGCTTCTCTAGAGGAGAAAACAGACTTCACCTT 358
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 604 GAGATCACTCAATGTTTTCCATCCTAATGCTTCCCTAGAGGAGAAAACAGACTTTACCTT 663
Query 359 TAGGCTTTACGACATGGACTGCACAGGCTTCATTGAGCGCCAAGAGGTGAAGCAAATGCT 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 664 TAGGCTTTACGACATGGACTGCACAGGCTTCATTGAGCGCCAAGAGGTGAAGCAGATGTT 723
Query 419 GATTGCACTTCTCTGCGAATCTGAAATGAAACTGGCTGATGATACAATAGAGATGATACT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 GATTGCACTTCTCTGCGAATCTGAAATGAAACTGGCTGATGATACAATAGAGATGATACT 783
Query 479 GGATCAGACATTTGAGGACGCAGACGTGGATCGGGATGGAAAGATTGATAAGACAGAATG 538
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 784 TGATCAGACATTTGAGGACGCAGATGTGGATCGGGATGGAAAGATTGATAAGACAGAATG 843
Query 539 GAGCAACTTCGTCATCAAAAACCCATCTTTGCTTAAAATCATGACTCTTCCGTATCTCAG 598
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 GAGCAATTTCGTTATCAAAAACCCATCTTTGCTTAAAATCATGACTCTTCCGTATCTCAG 903
Query 599 GGATATAACCACGACGTTTCCGAGTTTTGTTTTTAACTCGGAGGTGGACGAAATTGCTAC 658
||||||||| ||||| ||||||||||| || |||||||||||||||||||| ||||| ||
Sbjct 904 GGATATAACGACGACATTTCCGAGTTTCGTATTTAACTCGGAGGTGGACGAGATTGCGAC 963
Query 659 GTGAA-GAAACAAGACAAACTGGTT 682
||||| || ||||||||| ||||||
Sbjct 964 GTGAAAGAGACAAGACAAGCTGGTT 988
> AT4G17615.1 | Symbols: CBL1, ATCBL1, SCABP5 | calcineurin B-like
protein 1 | chr4:9816452-9819312 FORWARD LENGTH=1241
Length=1241
Score = 676 bits (366), Expect = 0.0
Identities = 567/665 (85%), Gaps = 10/665 (2%)
Strand=Plus/Plus
Query 11 TCATCTGTAAATGGGTTGTTTCCATTCCACGGCTGCGAGAGAATTTCCTGGTCACG-AGA 69
||||||||||||||| || ||||| || | ||| || | |||||||| || |||| ||
Sbjct 273 TCATCTGTAAATGGGCTGCTTCCACTCAAAGGCAGCAAAAGAATTTCGAGGACACGAAG- 331
Query 70 ACCCTGTGAAGCTAGCTTCTGAGACTGCTTTTAGTGTTAGTGAAGTTGAAGCATTGTATG 129
||||||| ||||| || |||||||| ||||||||||| ||||| ||||||||||| | ||
Sbjct 332 ACCCTGTTAAGCTTGCCTCTGAGACAGCTTTTAGTGTGAGTGAGGTTGAAGCATTATTTG 391
Query 130 AATTGTTCAAGAGCATAAGCAGCTCGGTTGTTGACGATGGCT-TGATAAACAAGGAAGAG 188
| | ||||||||||||||||| ||||||||||| ||||| | |||| |||||||| |||
Sbjct 392 AGCTATTCAAGAGCATAAGCAGTTCGGTTGTTGATGATGG-TCTGATTAACAAGGAGGAG 450
Query 189 TTTCAACTTGCTTTGTTCAAGAA-CAGAAAGAAGGAAAATTTGTTTGCCAATAGGATATT 247
|||||||||||||||||||| || | | |||| ||| ||| | ||||| |||||||||||
Sbjct 451 TTTCAACTTGCTTTGTTCAA-AAGCCGGAAGAGGGAGAATATATTTGCTAATAGGATATT 509
Query 248 TGATTTGTTTGATGTTAAACGAAAAGGCGTCATTGATTTTGGAGACTTTGTGAGATCACT 307
|||| |||||||||||||||||||||| ||||| ||||| || |||||||| ||||||||
Sbjct 510 TGATATGTTTGATGTTAAACGAAAAGGAGTCATCGATTTCGGGGACTTTGTAAGATCACT 569
Query 308 CAATGTTTTCCATCCTAATGCTTCTCTAGAGGAGAAAACAGACTTCACCTTTAGGCTTTA 367
|||||||||||| || |||||||||||||| || |||| ||| || || |||||||||||
Sbjct 570 CAATGTTTTCCACCCCAATGCTTCTCTAGAAGACAAAATAGATTTTACGTTTAGGCTTTA 629
Query 368 CGACATGGACTGCACAGGCTT-CATTGAGCGCCAAGAGGTGAAGCAAATGCTGATTGCAC 426
||||||||||||||| || || |||||| || |||||||| ||||||||| |||| || |
Sbjct 630 CGACATGGACTGCAC-GGGTTACATTGAACGACAAGAGGTCAAGCAAATGTTGATCGCGC 688
Query 427 TTCTCTGCGAATCTGAAATGAAACTGGCTGATGATACAATAGAGATGATACTGGATCAGA 486
|||||||||||||||||||||||||||||||||| || |||||||| ||||| ||| |||
Sbjct 689 TTCTCTGCGAATCTGAAATGAAACTGGCTGATGAAACCATAGAGATAATACTCGATAAGA 748
Query 487 CATTTGAGGACGCAGACGTGGATCGGGATGGAAAGATTGATAAGAC-AGAATGGAGCAAC 545
||||||| || ||||||||| ||| |||||||| |||||||| | ||| ||||| |
Sbjct 749 CATTTGAAGATGCAGACGTGAATCAAGATGGAAAAATTGATAA-ATTAGAGTGGAGTGAT 807
Query 546 TTCGTCATCAAAAACCCATCTTTGCTTAAAATCATGACTCTTCCGTATCTCAGGGATATA 605
||||| | |||||| ||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 808 TTCGTAAACAAAAATCCATCATTGCTTAAGATCATGACTCTTCCATATCTCAGGGATATT 867
Query 606 ACCACGACGTTTCCGAGTTTTGTTTTTAACTCGGAGGTGGACGAAATTGCTACGTGAAGA 665
|| || ||||||||||||||||| || | |||||||| || || ||||| || ||||||
Sbjct 868 ACGACAACGTTTCCGAGTTTTGTCTTCCATTCGGAGGTCGATGAGATTGCCACATGAAGA 927
Query 666 AACAA 670
|||||
Sbjct 928 AACAA 932
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33003834579
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5