BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948213
Length=495
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47340.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 368 3e-101
AT5G47330.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 346 1e-94
AT5G47350.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 248 4e-65
> AT5G47340.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:19209507-19211134 FORWARD LENGTH=954
Length=954
Score = 368 bits (199), Expect = 3e-101
Identities = 306/357 (86%), Gaps = 9/357 (3%)
Strand=Plus/Plus
Query 92 TCTCAGTCTCGGTTCCGTTCGTCGTGCTTCACGGAATCACCGCTGC-GTGTTCCGATCCG 150
||||||| || ||||||||| | |||||||||||||| | || | ||||| |||
Sbjct 65 TCTCAGTTTCAGTTCCGTTCATAATGCTTCACGGAATCGCATCT-CAATGTTCTGATGAT 123
Query 151 ACGAATGCCAACTTCACACAGCTTCTCA-TGAACCTCTCTGGCTCTCAAGGGTCATGCTT 209
|| ||||| ||||||||||||||||||| | |||||||||||||||| || | |||||
Sbjct 124 ACAAATGCTAACTTCACACAGCTTCTCACT-AACCTCTCTGGCTCTCCTGGCTTTTGCTT 182
Query 210 AGAAATTGGAGACAATGGA-CAACTCACTTCAATCTTCATGCCACTTACACAGCAAGCTG 268
||||||| | || |||||| || | | |||||| ||| ||||||||||||| ||||| |
Sbjct 183 AGAAATT-G-GA-AATGGAGTAA-TAAATTCAATGTTCTTGCCACTTACACAACAAGCAG 238
Query 269 AAATAGCATGTGAGAAGGTGAAGCAAATGAAAGAGTTGAGTCAAGGATACAACATTGTTG 328
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 239 AAATAGCATGTGAGAATGTGAAGGAAATGAAAGAGTTGAGTCAAGGATACAACATTGTTG 298
Query 329 GAAGATCTCAGGGGAACTTAGTGGCTCGAGGCTTGATCGAATTCTGCGACGGCGGGCCTC 388
||||||||||||||||| |||||||||||||||||||||| ||||||||||| || ||||
Sbjct 299 GAAGATCTCAGGGGAACCTAGTGGCTCGAGGCTTGATCGAGTTCTGCGACGGTGGACCTC 358
Query 389 CGGTTTACAACTACATATCTTTAGGTGGTCCTCATGCTGGGATATCCTCTGTTCCTA 445
| |||| |||||| ||||| |||| ||||||||||||||| || || ||| ||||||
Sbjct 359 CTGTTTTCAACTATATATCCTTAGCTGGTCCTCATGCTGGCATTTCTTCTCTTCCTA 415
> AT5G47330.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:19207099-19208822 FORWARD LENGTH=1127
Length=1127
Score = 346 bits (187), Expect = 1e-94
Identities = 360/439 (82%), Gaps = 30/439 (7%)
Strand=Plus/Plus
Query 24 AAT-GGAGGAGAAAGGTTTGATCAAGCAGTTTTGG-GTTGCGGTGGTGG-CG-GTTGC-A 78
||| ||| |||||||||||| |||| | | ||| ||||||||||||| | || | |
Sbjct 71 AATGGGA-GAGAAAGGTTTG---AAGC-GGTCTGGTGTTGCGGTGGTGGTTGCATTACTA 125
Query 79 -CTCTTGATTCACGTCTCAGTCTCGGTTCCGTTCGTCGTGCTTCACGGAATCACCGCTGC 137
| | || |||| ||||| || || ||||||||| | ||||||| || ||| | ||| |
Sbjct 126 GC-CATGGTTCATGTCTCTGTTTCAGTTCCGTTCATAATGCTTCATGGGATCTCAGCT-C 183
Query 138 -GTGTTCCGATCCGACGAATGCCAACTTCACACAGCTTCTCA-TGAACCTCTCTGGCTCT 195
||||| || | | | |||| ||||||||||||||||||| | |||||||||||||||
Sbjct 184 AATGTTCTAATGCTAGGGATGCTAACTTCACACAGCTTCTCACT-AACCTCTCTGGCTCT 242
Query 196 CAAGGGTCATGCTTAGAAATTGGAGACAATGGA-CAACTC-ACTTCAAT-CTTCATGCCA 252
| || | |||||||||||| | || |||||| | | | ||| || || |||||
Sbjct 243 CCTGGCTTTTGCTTAGAAATT-G-GA-AATGGAGTTGC-CGA-TTC-ATGGTTAATGCCG 296
Query 253 CTTACACAG-CAAGCTGAAATAGCATGTGAGAAGGTGAAGCAAATGAAAGAGTTGAGTCA 311
||||||| | ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 297 CTTACAC-GACAAGCGGAAATAGCGTGTGAGAAGGTGAAGCAAATGAAAGAGTTGAGTCA 355
Query 312 AGGATACAACATTGTTGGAAGATCTCAGGGGAACTTAGTGGCTCGAGGCTTGATCGAATT 371
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 356 AGGATACAACATTGTTGGAAGATCTCAGGGGAACCTAGTGGCTCGAGGCTTGATCGAGTT 415
Query 372 CTGCGACGGCGGGCCTCCGGTTTACAACTACATATCTTTAGGT-GGTCCTCATGCTGGGA 430
||| ||||| || ||||||||||||||||| ||||| || || |||||||||||||| |
Sbjct 416 CTGTGACGGTGGCCCTCCGGTTTACAACTATATATCCTT-GGCCGGTCCTCATGCTGGCA 474
Query 431 TATCCTCTGTTCCTACTGT 449
| ||||||||||||| |||
Sbjct 475 TCTCCTCTGTTCCTA-TGT 492
> AT5G47350.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:19212689-19214453 FORWARD LENGTH=1151
Length=1151
Score = 248 bits (134), Expect = 4e-65
Identities = 284/354 (80%), Gaps = 19/354 (5%)
Strand=Plus/Plus
Query 86 TTCACGTCTCAGTCTCGGTTCCGTTCGTCGTGCTTCAC-GGAATC--ACCGCTGCGTGTT 142
|||| ||||| || || ||||||||||| ||| ||| | | |||| | | | ||||
Sbjct 124 TTCATGTCTCTGTTTCAGTTCCGTTCGTAGTGTTTC-CTGAAATCGGAACAC--AATGTT 180
Query 143 CCGATCCGACGAATGCCAACTTCACACAGCTTCTCATG-AACCTCTCTGGCTCTCAAGGG 201
| ||| | | ||||| ||||||||||||||||||| | ||||||||| |||| | ||
Sbjct 181 CTGATGCTCCAAATGCTAACTTCACACAGCTTCTCA-GTAACCTCTCTAGCTCACCTGGC 239
Query 202 TCATGCTTAGAAATT-G-GA--GACAATGGACA-ACTCACTTCAAT-CTTCATGCCACTT 255
| ||| |||||||| | || || ||| | | | | |||| || || || ||||||
Sbjct 240 TTTTGCATAGAAATTGGCGAGGGA-AATCCA-ATAGGCGCTTC-ATGGTTAATACCACTT 296
Query 256 ACACAGCAAGCTGAAATAGCATGTGAGAAGGTGAAGCAAATGAAAGAGTTGAGTCAAGGA 315
||||| ||||| ||| |||| ||||| ||||||| ||| ||| |||||||||||||||||
Sbjct 297 ACACAACAAGCGGAAGTAGCGTGTGATAAGGTGACGCAGATGGAAGAGTTGAGTCAAGGA 356
Query 316 TACAACATTGTTGGAAGATCTCAGGGGAACTTAGTGGCTCGAGGCTTGATCGAATTCTGC 375
|||||||||||||||||| ||||||||| |||||||||||||||||| ||||| ||||||
Sbjct 357 TACAACATTGTTGGAAGAGCTCAGGGGAGCTTAGTGGCTCGAGGCTTAATCGAGTTCTGC 416
Query 376 GACGGCGGGCCTCCGGTTTACAACTACATATCTTTAGG-TGGTCCTCATGCTGG 428
|| || |||||||| ||| ||||||| ||||| || || |||||||||||||||
Sbjct 417 GAAGGTGGGCCTCCTGTTCACAACTATATATCCTT-GGCTGGTCCTCATGCTGG 469
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23610049090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5