BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948214
Length=1072
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47770.1 | Symbols: FPS1 | farnesyl diphosphate synthase 1 |... 1653 0.0
AT4G17190.1 | Symbols: FPS2 | farnesyl diphosphate synthase 2 |... 1216 0.0
> AT5G47770.1 | Symbols: FPS1 | farnesyl diphosphate synthase 1
| chr5:19345173-19347629 FORWARD LENGTH=1493
Length=1493
Score = 1653 bits (895), Expect = 0.0
Identities = 1003/1055 (95%), Gaps = 7/1055 (1%)
Strand=Plus/Plus
Query 1 GTATCCAAAGCTCTTCTTCAATGGAGGCCGATCTCAAGTCAACCTTTCTCAACGTTTATT 60
|||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 231 GTATCCAAAG--C-TCTTCAATGGAGACCGATCTCAAGTCAACCTTTCTCAACGTTTATT 287
Query 61 CCGTTCTCAAGTCCGACCTCCTTCACGACCCTTCCTTCGAATTCACCGATGAATCTCGTC 120
| ||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||||||||
Sbjct 288 CTGTTCTCAAGTCTGACCTTCTTCATGACCCTTCCTTCGAATTCACCAATGAATCTCGTC 347
Query 121 TCTGGGTTGACCGTATGCTCGACTACAATGTACGTGGAGGGAAACTCAATCGGGGTCTCT 180
|||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 348 TCTGGGTTGATCGGATGCTGGACTACAATGTACGTGGAGGGAAACTCAATCGGGGTCTCT 407
Query 181 CCGTTGTTGACAGCTTCAAACTTTTGAAGCAAGGCAAAGATTTGACTGAGCAAGAGGTTT 240
| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 408 CTGTTGTTGACAGTTTCAAACTTTTGAAGCAAGGCAATGATTTGACTGAGCAAGAGGTTT 467
Query 241 TTCTCTCTTGTGCTCTCGGTTGGTGCATTGAATGGCTTCAAGCTTATTTCCTTGTACTTG 300
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 468 TCCTCTCTTGTGCTCTCGGTTGGTGCATTGAATGGCTCCAAGCTTATTTCCTTGTGCTTG 527
Query 301 ATGACATTATGGATAACTCTGTCACCCGCCGTGGCCAACCTTGCTGGTTCAGAGTTCCTC 360
|||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 528 ATGATATTATGGATAACTCTGTCACTCGCCGTGGTCAACCTTGCTGGTTCAGAGTTCCTC 587
Query 361 AGGTTGGTATGGTTGCCATCAACGATGGGATTCTGCTTCGCAATCACATCCACAGGATTC 420
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 588 AGGTTGGTATGGTTGCCATCAATGATGGGATTCTACTTCGCAATCACATCCACAGGATTC 647
Query 421 TCAAAAAGCACTTCCGGGGA-ATGCCTTACTATGTTGACCTCGTTGATTTGTTTAATGAG 479
|||||||||| |||| | || | |||||||||||||||||| ||||||||||||||||||
Sbjct 648 TCAAAAAGCATTTCC-GTGATAAGCCTTACTATGTTGACCTTGTTGATTTGTTTAATGAG 706
Query 480 GTTGAGTTGCAAACAGCTTGTGGCCAGATGATAGATTTGATCACCACCTTTGAAGGCGAA 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 707 GTTGAGTTGCAAACAGCTTGTGGCCAGATGATAGATTTGATCACCACCTTTGAAGGAGAA 766
Query 540 AAGGATTTGTCCAAGTACTCATTGTCAATTCACCGGCGTATTGTCCAGTACAAAACGGCT 599
||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 767 AAGGATTTGGCCAAGTACTCATTGTCAATCCACCGTCGTATTGTCCAGTACAAAACGGCT 826
Query 600 TATTACTCGTTTTATCTCCCTGTTGCTTGTGCATTGCTTATGGCGGGTGAAAATTTGGAA 659
|||||||| ||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 827 TATTACTCATTTTATCTCCCTGTTGCTTGTGCGTTGCTTATGGCCGGCGAAAATTTGGAA 886
Query 660 AACCATATTGATGTGAAGAATGTTCTTGTTGACATGGGAATCTACTTCCAAGTGCAGGAT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 AACCATATTGATGTGAAGAATGTTCTTGTTGACATGGGAATCTACTTCCAAGTGCAGGAT 946
Query 720 GATTATCTGGATTGTTTTGCTGATCCCGAGACGCTTGGCAAGATAGGAACGGATATAGAA 779
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 947 GATTATCTGGATTGTTTTGCTGATCCCGAGACGCTTGGCAAGATAGGAACAGATATAGAA 1006
Query 780 GATTTCAAATGCTCGTGGTTGGTGGTCAAGGCATTAGAACGCTGCAGCGAAGAACAAACT 839
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1007 GATTTCAAATGCTCGTGGTTGGTGGTTAAGGCATTAGAGCGCTGCAGCGAAGAACAAACT 1066
Query 840 AAGATATTATATGAGAATTATGGTAAAGCCGACCCATCAAACGTTGCTAAAGTGAAGGAT 899
||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1067 AAGATATTATATGAGAACTATGGTAAACCCGACCCATCGAACGTTGCTAAAGTGAAGGAT 1126
Query 900 CTCTACAAAGAGCTTGATCTTGAGGGAGTGTTCATGGAGTATGAGAGCAAAAGCTATGAG 959
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1127 CTCTACAAAGAGCTGGATCTTGAGGGAGTTTTCATGGAGTATGAGAGCAAAAGCTACGAG 1186
Query 960 AAGCTGA-TGGGAGTGATTGAGGGTCACAAAAGTACAGCAATCCAAGCAGTGCTAAAATC 1018
||||||| ||| || ||||||||| ||| |||||| ||||||||||||||||||||||||
Sbjct 1187 AAGCTGACTGG-AGCGATTGAGGGACACCAAAGTAAAGCAATCCAAGCAGTGCTAAAATC 1245
Query 1019 CTTCTTGGCTAAGATCTACAAGAGGCAGAAGTAGT 1053
|||||||||||||||||||||||||||||||||||
Sbjct 1246 CTTCTTGGCTAAGATCTACAAGAGGCAGAAGTAGT 1280
> AT4G17190.1 | Symbols: FPS2 | farnesyl diphosphate synthase 2
| chr4:9648527-9650912 REVERSE LENGTH=1292
Length=1292
Score = 1216 bits (658), Expect = 0.0
Identities = 908/1031 (88%), Gaps = 8/1031 (1%)
Strand=Plus/Plus
Query 26 GGCCGATCTCAAGTCAACCTTTCTCAACGTTTATTCCGTTCTCAAGTCCGACCTCCTTCA 85
||| ||||| || |||||||| ||| ||||||| || ||||||||||| || || |||||
Sbjct 50 GGCGGATCTGAAATCAACCTTCCTCGACGTTTACTCTGTTCTCAAGTCTGATCTGCTTCA 109
Query 86 CGACCCTTCCTTCGAATTCACCGATGAATCTCGTCTCTGGGTTGACCGTATGCTCGACTA 145
|| |||||||| ||||||||| | |||||||||| ||| |||| || ||||| |||||
Sbjct 110 AGATCCTTCCTTTGAATTCACCCACGAATCTCGTCAATGGCTTGAACGGATGCTTGACTA 169
Query 146 CAATGTACGTGGAGGGAAACTCAATCGGGGTCTCTCCGTTGTTGACAGCTTCAAACTTTT 205
||||||||| |||||||| || ||||| |||||||| || ||||| |||| ||| || ||
Sbjct 170 CAATGTACGCGGAGGGAAGCTAAATCGTGGTCTCTCTGTGGTTGATAGCTACAAGCTGTT 229
Query 206 GAAGCAAGG-CAAAGATTTGACTGAGCAAGAGGTTTTTCTCTCTTGTGCTCTCGGTTGGT 264
||||||||| | |||| ||||| ||| ||||| ||| ||||| |||||||| |||||||
Sbjct 230 GAAGCAAGGTC-AAGACTTGACGGAGAAAGAGACTTTCCTCTCATGTGCTCTTGGTTGGT 288
Query 265 GCATTGAATGGCTTCAAGCTTATTTCCTTGTACTTGATGACATTATGGATAACTCTGTCA 324
||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 289 GCATTGAATGGCTTCAAGCTTATTTCCTTGTGCTTGATGACATCATGGACAACTCTGTCA 348
Query 325 CCCGCCGTGGCCAACCTTGCTGGTTCAGAGTTCCTCAGGTTGGTATGGTTGCCATCAACG 384
| ||||||||||| ||||| ||||| ||| || ||||||||||| ||||||| ||||
Sbjct 349 CACGCCGTGGCCAGCCTTGTTGGTTTAGAAAGCCAAAGGTTGGTATGATTGCCATTAACG 408
Query 385 ATGGGATTCTGCTTCGCAATCACATCCACAGGATTCTCAAAAAGCACTTCCGGGGAATGC 444
|||||||||| ||||||||||| ||||||||||||||||||||||||||| ||| |||||
Sbjct 409 ATGGGATTCTACTTCGCAATCATATCCACAGGATTCTCAAAAAGCACTTCAGGGAAATGC 468
Query 445 CTTACTATGTTGACCTCGTTGATTTGTTTAATGAGGTTGAGTTGCAAACAGCTTGTGGCC 504
||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||
Sbjct 469 CTTACTATGTTGACCTCGTTGATTTGTTTAACGAGGTAGAGTTTCAAACAGCTTGCGGCC 528
Query 505 AGATGATAGATTTGATCACCACCTTTGAAGGCGAAAAGGATTTGTCCAAGTACTCATTGT 564
||||||| |||||||||||||||||||| || ||||| |||||||| |||||||| |||
Sbjct 529 AGATGATTGATTTGATCACCACCTTTGATGGAGAAAAAGATTTGTCTAAGTACTCCTTG- 587
Query 565 CAATTC-ACCGGCGTATTGTCCAGTACAAAACGGCTTATTACTCGTTTTATCTCCCTGTT 623
||| || | ||||||||||| |||||||||| ||||||||||| |||||||| ||||||
Sbjct 588 CAAATCCATCGGCGTATTGTTGAGTACAAAACAGCTTATTACTCATTTTATCTTCCTGTT 647
Query 624 GCTTGTGCATTGCTTATGGCGGGTGAAAATTTGGAAAACCATATTGATGTGAAGAATGTT 683
||||| |||||||| |||||||| ||||||||||||||||||| ||||||||||| ||||
Sbjct 648 GCTTGCGCATTGCTCATGGCGGGAGAAAATTTGGAAAACCATACTGATGTGAAGACTGTT 707
Query 684 CTTGTTGACATGGGAATCTACTTCCAAGTGCAGGATGATTATCTGGATTGTTTTGCTGAT 743
||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 708 CTTGTTGACATGGGAATTTACTTTCAAGTACAGGATGATTATCTGGACTGTTTTGCTGAT 767
Query 744 CCCGAGACGCTTGGCAAGATAGGAACGGATATAGAAGATTTCAAATGCTCGTGGTTGGTG 803
|| ||||| |||||||||||||| || || |||||||||||||||||||| ||||||||
Sbjct 768 CCTGAGACACTTGGCAAGATAGGGACAGACATAGAAGATTTCAAATGCTCCTGGTTGGTA 827
Query 804 GTCAAGGCATTAGAACGCTGCAGCGAAGAACAAACTAAGATATTATATGAGAATTATGGT 863
|| |||||||| ||||||||||| |||||||||||||||||| |||| ||||| ||||||
Sbjct 828 GTTAAGGCATTGGAACGCTGCAGTGAAGAACAAACTAAGATACTATACGAGAACTATGGT 887
Query 864 AAAGCCGACCCATCAAACGTTGCTAAAGTGAAGGATCTCTACAAAGAGCTTGATCTTGAG 923
|||||||| ||||||||||||||||| ||||| | ||||||||||||||||||||| |||
Sbjct 888 AAAGCCGAACCATCAAACGTTGCTAAGGTGAAAGCTCTCTACAAAGAGCTTGATCTCGAG 947
Query 924 GGAGTGTTCATGGAGTATGAGA-GCAAAAGCTATGAGAAGCTGATGGGAGT-GATTGAGG 981
|||| ||||||||| ||||||| | ||| ||||||||||||||| ||| ||| || |
Sbjct 948 GGAGCGTTCATGGAATATGAGAAGGAAA-GCTATGAGAAGCTGACAA-AGTTGATCGAAG 1005
Query 982 GTCACAAAAGTACAGCAATCCAAGCAGTGCTAAAATCCTTCTTGGCTAAGATCTACAAGA 1041
|||| | |||| |||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1006 CTCACCAGAGTAAAGCAATTCAAGCAGTGCTAAAATCTTTCTTGGCTAAGATCTACAAGA 1065
Query 1042 GGCAGAAGTAG 1052
|||||||||||
Sbjct 1066 GGCAGAAGTAG 1076
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52509770070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5