BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948218
Length=996
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47090.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 1282 0.0
> AT5G47090.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF2052, coiled-coil (InterPro:IPR018613);
Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink). | chr5:19127259-19128769 FORWARD
LENGTH=1224
Length=1224
Score = 1282 bits (694), Expect = 0.0
Identities = 894/983 (91%), Gaps = 43/983 (4%)
Strand=Plus/Plus
Query 9 GAG-GAGGAGAACAATGG-A-AG-AGAAGAAGACGATGGA-A-GGAA-C-AC--CAATGA 58
||| |||||||||||||| | || |||||||||||||||| | |||| | || ||||||
Sbjct 2 GAGAGAGGAGAACAATGGAAGAGAAGAAGAAGACGATGGAGATGGAAGCAACAACAATGA 61
Query 59 AAGACACGGCGGCCGAAGAAATAACGGCGAGATTGTCTTCTCTCGACAACCTCTATTTTC 118
||| ||||||||| ||||| ||||||| |||| | |||||||||||||| ||||||||||
Sbjct 62 AAGGCACGGCGGCGGAAGATATAACGGAGAGACTCTCTTCTCTCGACAATCTCTATTTTC 121
Query 119 CACGCGCCGTCCAATTAACCGCCGCATCTTCCGACCAACGCAAATCCATCCTCCTCGACC 178
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 122 CACGCGCCGTCCAATTAACCGCTGCATCTTCCGACCAACGCAAATCCATCCTCCTCGACC 181
Query 179 TCCTCCGTCGTGATCCCGCCGTTTTTCTCGAGAGATATGGATCGGAGCTGCTAGTAGATG 238
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 182 TCCTCCGTCGTGATCCCGCCGTTTTTCTAGAGAGATATGGATCGGAGCTACTAGTAGATG 241
Query 239 AATTGCTTGAGTTTGATGCTATGAAACATGACTACGAGGTTGATTGGCACTTGAAAAACC 298
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 242 AATTGCTTGAGTTTGATGCTATGAAACATGACTACGAGGTTGATTGGCATTTGAAAAACC 301
Query 299 TGCGGAAGAAGATAAGTCCGACTTCGGAAGAGCTTAAATCTAGGTGTGTAGCTGTCAGGA 358
||||||||||||||||||||||||| |||||| ||||||| |||| ||||||||| ||||
Sbjct 302 TGCGGAAGAAGATAAGTCCGACTTCAGAAGAGATTAAATCGAGGTCTGTAGCTGTGAGGA 361
Query 359 ATAGAAGATTGGCTTACTTGAATAAGCTTGTATCCGAGGGACAGTATTTCTCTGAGGATG 418
|||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 362 ATAGGAGATTGGCTTATTTGAATAAGCTTGTATCCGAGGGACAGTATTTCTCAGAGGATG 421
Query 419 CTATGAGAGATAGAGAGCCGTATCTACATCATGAGTATGTTGGGAAGTTTCAGGATGTGA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 CTATGAGAGATAGAGAGCCGTATCTACATCATGAGTATGTTGGGAAGTTTCAGGATGTGA 481
Query 479 TGGGTAGGAATATGGCTAGGCCTGGAGAACGTTGGTCTGAGACGTTGATGAGAAGGGCAG 538
|||| ||||| |||||||||||||||||||||||||||||||| ||||||||| |||| |
Sbjct 482 TGGGAAGGAACATGGCTAGGCCTGGAGAACGTTGGTCTGAGACTTTGATGAGACGGGCTG 541
Query 539 AGGAAGCGGTTTTGGTTACTCGGATTAGAGAGGAGCAGCAGAGGTTAGGTGTTGCAGAGA 598
|||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 542 AGGAAGCGGTGTTGGTTACTCGTATTAGAGAGGAGCAGCAGAGGTTAGGTGTTTCAGAGA 601
Query 599 GTGATTGGATTGGTAATgagaagatggaggaatcagaagaagaagaagaagaggaagagg 658
|||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 602 GTGATTGGGTTGGTAATGAGAAGATGGAGGAATCAGAAGAAGAGGAAGAGGAGGAATC-- 659
Query 659 aggaagaagaggaatcggaagaagatgaagaagcgaagaatcctacagaagCTAGCTCAA 718
|| |||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AG-AAGAGGAGGAAGAAGAAGAAGATGAAGAAGCGAAGAATCCTACAGAAGCTAGCTC-- 716
Query 719 GCCTTGAACAGGTTACGGATATCAATGGAACATTGCATGATAGAGAACATAACA-ACAAG 777
|| || | | | | || || | | | | | |||||| || | | |||
Sbjct 717 ---TT---CA----A-G--T--C--TG-AA--TGG--T-A-A-AGAACAGAA-AGAGAAG 750
Query 778 GCAACAACCGTCTTACCGCCGGAGGAGATGCAAGATATGATGGAGCAGTTCACATCAATC 837
|||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 751 GCAACAACAGTCTTACCGCCAGAGGAGATGCAAGATATGATGGATCAGTTCACATCAATC 810
Query 838 ATGCAACAGAAGTTCTTATCGGGAGAAGATCATCAACATTTGGATTACACAAAGATAGAC 897
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 811 ATGGAACAGAAGTTCTTATCGGGAGAAGATCATCAACATTTGGATTACGCAAAGATAGAC 870
Query 898 AATGACGAGACTCTTGATGATCATTGGCTTCGAGAGATTGGCCTTGACGCTGAAGATAAG 957
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 871 AATGACGAGACTCTTGATGATCATTGGCTTCGAGAGATTGGCCGTGACGCTGAAGATAAG 930
Query 958 TACTTTGGTGAAGACTAAT-GGA 979
||||||| ||||||||||| |||
Sbjct 931 TACTTTGATGAAGACTAATTGGA 953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48777356737
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5