BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948238

Length=584
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G46970.1 | Symbols:  | Plant invertase/pectin methylesterase...   726    0.0  


> AT5G46970.1 | Symbols:  | Plant invertase/pectin methylesterase 
inhibitor superfamily protein | chr5:19063918-19064412 REVERSE 
LENGTH=495
Length=495

 Score =  726 bits (393),  Expect = 0.0
 Identities = 459/492 (93%), Gaps = 0/492 (0%)
 Strand=Plus/Plus

Query  24   ATGACGTTCTTGCTCTACCTTGTTATGTTCTTTCTGCTCTTAAACGCTTTCGCAATGGCA  83
            |||||||||||| ||||  ||| |||||||||||||||||||||||||||| |||| |||
Sbjct  1    ATGACGTTCTTGTTCTATTTTGCTATGTTCTTTCTGCTCTTAAACGCTTTCACAATTGCA  60

Query  84   CAATCTTTGATCCGAGATTCTTGCAAGAAAGCTGCAGATCAAAACCCAAAGATTCATTAC  143
            ||||||||||||| ||||| ||||||||||||||||||| ||||||| ||||||||||||
Sbjct  61   CAATCTTTGATCCAAGATTTTTGCAAGAAAGCTGCAGATAAAAACCCGAAGATTCATTAC  120

Query  144  AATTTCTGCGTTAAGTCTCTCGAAGAGAATCCGCATAGCAAAACCGCACGTAGTCTTGAT  203
            || ||||| || |||||||||||||||||||| || |||||||| |||||||||||||| 
Sbjct  121  AACTTCTGTGTCAAGTCTCTCGAAGAGAATCCACAGAGCAAAACTGCACGTAGTCTTGAC  180

Query  204  AGGTTGGTCATGTCATCCACAAAAAACGCAGTGTCGAAAACAACAAGCATGAAAGGAATT  263
            ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  181  AGGTTGGTCATGTTATCCACGAAAAACGCAGTGTCGAAAACAACAAGCATGAAAGGAATT  240

Query  264  GTGGACAAGATTCTCAAAGAGAATAGATATGAAAAGTACAGTGAGAAACCATTACGCGAT  323
            ||||||||||||||||| |||||||||| ||||| ||| ||||||||||||||||| |||
Sbjct  241  GTGGACAAGATTCTCAAGGAGAATAGATTTGAAATGTATAGTGAGAAACCATTACGTGAT  300

Query  324  TGCCTCGAGCTTTATTCGGATGCTACAAATTCCTTAACCGAAGCTTTAACGATCATTAAA  383
            |||||||| ||||||||||||||||||||||||||||  |||||| ||||||||||||| 
Sbjct  301  TGCCTCGAACTTTATTCGGATGCTACAAATTCCTTAAAGGAAGCTCTAACGATCATTAAG  360

Query  384  TCGCGTGATTACAAAACCGCTAACGTGGTTATAAGTGCCGCAGTGGGTGCACCACCTAGT  443
            ||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct  361  TCGCGTGATTATAAAACCGCTAACGTGGTTATAAGTGCTGCAATGGGTGCACCACCTAGT  420

Query  444  TGCGAAATTGGATTCAAAGAAGGAAAAGAACCTCTCAAATCTCCATTTACAAAAGATAAC  503
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  421  TGCGAAATTGGATTCAAAGAAGGAAAAAAACCTCTCAAATCTCCATTTACAAAAGATAAC  480

Query  504  GATGTTTTGTTT  515
            ||||||||||||
Sbjct  481  GATGTTTTGTTT  492



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28080888173


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5