BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948239
Length=565
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46960.1 | Symbols: | Plant invertase/pectin methylesterase... 660 0.0
AT5G46950.1 | Symbols: | Plant invertase/pectin methylesterase... 604 2e-172
> AT5G46960.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr5:19062174-19062780 REVERSE
LENGTH=607
Length=607
Score = 660 bits (357), Expect = 0.0
Identities = 501/569 (88%), Gaps = 15/569 (3%)
Strand=Plus/Plus
Query 1 CTCAAAGTaaaaaaaaTAAAATGAAGTTGTTGGTTTCATTGGTTATCGTCTCTATTTTCT 60
|||||||| |||| || ||||||||||| |||||||||||||||||| ||||| ||||||
Sbjct 18 CTCAAAGTGAAAACAA-AAAATGAAGTTCTTGGTTTCATTGGTTATCTTCTCTCTTTTCT 76
Query 61 TGAACGGTTTCGCAACCGCTCAAACTCTCATTGAAGATTCTTGCAAGAAAGCTTTCGCGA 120
| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 77 TAAACGGTTTCGCAACCGCTCAAACTCTCATTCAAGATTCTTGCAAGAAAGCTTTTGCGA 136
Query 121 AAGACCCGCAGGTGACATACGAGTTCTGCGTCAAGTCTCTTACAGAAGATCCACAAAGCA 180
|||||||||| || ||||||| ||||||||||| ||||||||| |||||||||||||||
Sbjct 137 AAGACCCGCAATTGTCATACGATTTCTGCGTCAATTCTCTTACACAAGATCCACAAAGCA 196
Query 181 AAGCCGCGACTACTCTCGAAGGTTTGCTCCTAGCATCGACGAAGAACGCTGCAGCAAAAT 240
|||||||||||||||||||| ||||| |||||||||||||||||| |||||| ||||||
Sbjct 197 AAGCCGCGACTACTCTCGAAAGTTTGGTCCTAGCATCGACGAAGACCGCTGCGGCAAAAA 256
Query 241 TTACAAACATGAAAGGAGTCGTT-CAACAAGATATCAAGGACAAGAGATATGCTG-ATAT 298
| || ||| |||||||| ||||| || || ||| |||| ||| |||||||| | | ||||
Sbjct 257 TCACGAACTTGAAAGGAATCGTTGCA-CAGGATCTCAAAGACCAGAGATAT-CAGGATAT 314
Query 299 TGTGGGATTGTTACG-CTTATGCCTCGGATTTTATGACGATGCTAATGATGATTTAAACA 357
||||| | ||| ||| ||||||||||||||| ||||||||||||||||||||| ||
Sbjct 315 TGTGGAAGACTTAAAACTT-TGCCTCGGATTTTATAACGATGCTAATGATGATTTAA-CA 372
Query 358 -CTGCTTTAAAGAACGTTCAATCGCATGATTATGAAGGCGCTAACATTAATCTGAGTGCC 416
|||||||| |||| || |||||| ||||||| |||||||||||||||||||||||||
Sbjct 373 ACTGCTTTAGCGAACATTAAATCGCGTGATTATCAAGGCGCTAACATTAATCTGAGTGCT 432
Query 417 GCTCTGGATGTATCGGGCAATTGCGAGGATGCATT-CAAGGAAGACAAAAA-GAAGTCTC 474
||| |||||||| | |||||||||||||||| ||| |||||||| |||||| || |||||
Sbjct 433 GCTTTGGATGTACCAGGCAATTGCGAGGATG-ATTTCAAGGAAG-CAAAAAAGACGTCTC 490
Query 475 CGATTACTACCGAGAAT-GATATTTTGTATAAGAAGGTTTTGATTCCTTTGGCTTTTACT 533
||||||| | |||||| | |||||||| ||||| | |||||||||||||||||||||||
Sbjct 491 CGATTACCAACGAGAACAG-TATTTTGTTTAAGACGATTTTGATTCCTTTGGCTTTTACT 549
Query 534 AATATGTTGTGATAAATTTATCAAAGTGT 562
|||||||||| ||||||||||||||||||
Sbjct 550 AATATGTTGTAATAAATTTATCAAAGTGT 578
> AT5G46950.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr5:19059519-19060121 REVERSE
LENGTH=603
Length=603
Score = 604 bits (327), Expect = 2e-172
Identities = 494/572 (86%), Gaps = 22/572 (4%)
Strand=Plus/Plus
Query 1 CTCAAAGTaaaaa-aaaTAAAATGAAGTTGTTGGTTTCATTGGTTATCGTCTCTATTTTC 59
||||||||||||| ||| ||||||||||| |||||||||||||| ||| ||||| |||||
Sbjct 13 CTCAAAGTAAAAACAAA-AAAATGAAGTTCTTGGTTTCATTGGTGATCTTCTCTCTTTTC 71
Query 60 TTGAACGGTTTCGCAACCGCTCAAACTCTCATTGAAGATTCTTGCAAGAAAGCTTTCGCG 119
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 72 TTGAACGGTTTCGCAACCGCTCAAACTCTCATTCAAGATTCTTGCAAGAAAGCTTTTGCG 131
Query 120 AAAGACCCGCAGGT-GACATACGAGTTCTGCGTC-AAGTCTCTTACAG-AAGATCCACAA 176
||||||||||| | | ||||||| ||||||||| || |||||||| | |||||||||||
Sbjct 132 AAAGACCCGCAA-TCGTCATACGATTTCTGCGTCCAA-TCTCTTAC-GCAAGATCCACAA 188
Query 177 AGCAAAGCCGCGACTACTCTCGAAGGTTTG-CTCCTAGCATCGACGAAGAACGCTGCAGC 235
||||||||||| ||||||||||||| |||| | |||||||||||| ||||||| ||| ||
Sbjct 189 AGCAAAGCCGCAACTACTCTCGAAGATTTGGC-CCTAGCATCGACAAAGAACGTTGCGGC 247
Query 236 AAAATTTACAAACATGAAAGGAGTCGTT-CAACAAGATATCAAGGACAAGAGATATGCTG 294
|||| | || ||| |||||||| ||||| || || ||| |||||||| |||||||| | |
Sbjct 248 AAAAATCACGAACCTGAAAGGAATCGTTGCA-CAGGATCTCAAGGACCAGAGATAT-CAG 305
Query 295 -ATATTGTGGGATTGTTACG-CTTATGCCTCGGATTTTATGACGATGCTAATGATGATTT 352
||||||||| | ||| ||| ||||||||||||||| | |||||||||||| |||
Sbjct 306 GATATTGTGGAAGACTTAAAACTT-TGCCTCGGATTTTATAAAGATGCTAATGATTCTTT 364
Query 353 AAACACTGCTTTAAAGAACGTTCAATCGCATGATTATGAAGGCGCTAACATTAATCTGAG 412
||| ||||||||| |||| || |||||| ||||||||| |||||||||| |||||||||
Sbjct 365 AAAAACTGCTTTAGCGAACATTAAATCGCGTGATTATGACGGCGCTAACAGTAATCTGAG 424
Query 413 TGCCGCTCTGGATGTATCG-GGCAATTGCGAGGATGCATT-CAAGGAAGACA-AAAAGAA 469
||| ||| || ||| || ||| |||||||||||| ||| |||||||| || |||||||
Sbjct 425 TGCTGCTTTGAATGC-TCCAGGCGATTGCGAGGATG-ATTTCAAGGAAG-CAGAAAAGAA 481
Query 470 GTCTCCGATTACTACCGAGAATGATATTTTGTATAAGAAGGTTTTGATTCCTTTGGCTTT 529
|||||||||||||| |||||| ||||||||||||||| | || | ||||||||||||||
Sbjct 482 GTCTCCGATTACTAACGAGAACAATATTTTGTATAAGACGATTGTAATTCCTTTGGCTTT 541
Query 530 TACTAATATGTTGTGATAAATTTATCAAAGTG 561
||||| |||||||| |||||||||||||||||
Sbjct 542 TACTACTATGTTGTAATAAATTTATCAAAGTG 573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27126439380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5