BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948241

Length=582
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G46930.1 | Symbols:  | Plant invertase/pectin methylesterase...   837    0.0  


> AT5G46930.1 | Symbols:  | Plant invertase/pectin methylesterase 
inhibitor superfamily protein | chr5:19056655-19057191 REVERSE 
LENGTH=537
Length=537

 Score =  837 bits (453),  Expect = 0.0
 Identities = 509/537 (95%), Gaps = 0/537 (0%)
 Strand=Plus/Plus

Query  21   ATGAAATTCTTGCTTTACCTTGTTATGTTTTTTCTCCCCTTAAATTGTTGCGCAACCGCA  80
            |||||||||| |||||||||||||||||| ||||||| |||||| |||| ||||||||||
Sbjct  1    ATGAAATTCTCGCTTTACCTTGTTATGTTCTTTCTCCTCTTAAACTGTTTCGCAACCGCA  60

Query  81   CAATCTCTGATTCGAGATTCTTGCAAGAAAGCTGCAGCTACAGACCCGAAACTCAAATAC  140
            |||||||||||||| ||||||||||| |||||| || ||| |||||||||||||||||| 
Sbjct  61   CAATCTCTGATTCGGGATTCTTGCAAAAAAGCTACAACTAAAGACCCGAAACTCAAATAT  120

Query  141  GATTTCTGCGTCAAGTCTCTTGAAGAGAATCCGCAGAGCAAAACCGCAAAAAGTCTTGAA  200
            ||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct  121  GATTTTTGCGTCAAGTCTCTCGAAGAGAATCCGCAGAGCAAAACCGCAAAGAGTCTTGAA  180

Query  201  GGATTGGTCTTCGCATCGACCAAGAACGCTGTTTCGAAAACGACGAGCTTGAAAGGAATG  260
            || |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  181  GGTTTGGTCTTCGTATCGACCAAGAACGCTGTTTCGAAAACGACTAGCTTGAAAGGAATG  240

Query  261  GTTGACAAGATTCTCAAGGAGGATAAATATGAAGTGGAGAGGCCGTTACGTGATTGTCTC  320
            ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct  241  GTTGACAAGATTCTCAAGGAGGATAAATATGAAGTGGAGAGGCCGTTACTTGATTGCCTC  300

Query  321  GAGCTTTATACCGAAGCTATTGATTCCTTAAACCAATCTTTAGACACCGTTAAGTCGCGT  380
            || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  301  GAACTTTATACCGAAGCTATTGATTCCTTAAACCAATCTTTAGACACTGTTAAGTCGCGT  360

Query  381  GATTACAAAACCGCTACCATGCTTATGAGTGCTGCAATGGATGCACCAGGAAATTGCGAA  440
            ||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct  361  GATTACAAAACAGCTACCATGCTTATGAGTGCTGCAATGGATGCACCGGGAAGTTGCGAA  420

Query  441  AGTAGATTCACaaaaagaaaaaaGGCTGTGAAATCTCCATTTACGAAAGAGAACGATGTC  500
            | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  ACTAAATTCACAAAAAGAAAAAAGGCTGTGAAATCTCCATTTACGAAAGAGAACGATGTC  480

Query  501  TTGTTTCACATGGTTCTGATTCCTATAGCTTTTACAAATATGTTAGATATGAAATAA  557
            |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  481  TTGTTTTACATGGTTCTGATTCCTATAGCTTTTACAAGTATGTTAGATATGAAATAA  537



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27980419879


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5