BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948245
Length=2200
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46910.1 | Symbols: | Transcription factor jumonji (jmj) fa... 3504 0.0
> AT5G46910.1 | Symbols: | Transcription factor jumonji (jmj)
family protein / zinc finger (C5HC2 type) family protein | chr5:19046858-19050880
FORWARD LENGTH=2394
Length=2394
Score = 3504 bits (1897), Expect = 0.0
Identities = 2069/2152 (96%), Gaps = 11/2152 (1%)
Strand=Plus/Plus
Query 1 TCTACTGTGAAAGGTGGCTTGATGAAGGACAAAGTGGAGAAGTTTGAGACAGATGATCTA 60
|||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 253 TCTACTGTGAGAGGTGGCTTGATGAAGGAAAAAGTGGAGAAGCTTGAGACAGATGATCTA 312
Query 61 AAATGGACTGAGAGGCTTCCAGAATGTCCTGTCTACAGACCAACAAAGGAGGAGTTTGAG 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 AAATGGACCGAGAGGCTTCCAGAATGTCCTGTCTACAGACCAACAAAGGAGGAGTTTGAG 372
Query 121 GATCCTCTGACTTATTTGCAGAAGATTTTCCCAGAAGCTTCAAAATATGGTATTTGCAAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 GATCCTCTGACTTATTTGCAGAAGATTTTCCCAGAAGCTTCAAAATATGGTATTTGCAAG 432
Query 181 ATTGTATCTCCGTTGACAGCAACAGTTCCCGCAGGCGCTGTGTTGATGAAAGAGAAATCA 240
||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 433 ATTGTATCTCCTTTGACAGCAACAGTTCCTGCTGGCGCTGTGTTGATGAAAGAGAAATCA 492
Query 241 AACTTTAAGTTCACTACCAGAGTACAACCCCTTCGACTCGCCGAGTGGGATTCTGATGAT 300
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 493 AACTTTAAGTTCACTACCAGAGTACAACCCCTTCGACTTGCTGAGTGGGATTCTGATGAT 552
Query 301 AAAGTTACATTTTTCATGAGTGGGAGGACCTATACATTTCGGGATTATGAGAAAATGGCA 360
||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 553 AAAGTTACATTCTTCATGAGTGGGAGGACCTATACATTTCGCGACTATGAGAAAATGGCG 612
Query 361 AACAAGGTATTTGCACGTAGATATTGCAGTGGTGGCTCTTTGCCCGACTCATTCTTGGAG 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 AACAAGGTATTTGCACGCAGATATTGCAGTGGTGGCTCTTTGCCCGACTCATTCTTGGAG 672
Query 421 AAAGAATTCTGGAAGGAAATTGCGTGTGGCAAGACTGAAACAGTTGAGTATGCGTGTGAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 AAAGAATTCTGGAAGGAAATTGCGTGTGGCAAGACTGAAACAGTTGAGTATGCGTGTGAT 732
Query 481 GTAGATGGTAGCGCATTTTCATCTGCACCAGGTGACCCACTAGGAAGCAGCAAATGGAAC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 GTAGATGGTAGCGCATTTTCATCTGCACCAGGTGACCCACTAGGAAGCAGCAAATGGAAC 792
Query 541 TTGAATAAAGTTTCAAGGCTGCCGAAGTCTACCCTGCGCCTTCTTGGAACATCCATTCCG 600
|||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||
Sbjct 793 TTGAATAAAGTTTCAAGGCTTCCTAAGTCTACCCTGCGCCTTCTTGAAACATCCATTCCG 852
Query 601 GGAGTCACTGAACCCATGCTTTACATCGGAATGCTGTTT-AGTATGTTTGCCTGGCATGT 659
|||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 853 GGAGTCACAGAACCCATGCTTTACATCGGAATGCT-TTTCAGTATGTTTGCCTGGCATGT 911
Query 660 TGAGGACCATTATTTGTACAGCATTAATTACCAACATTGTGGAGCATCAAAAACTTGGTA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 TGAGGACCATTATTTGTACAGCATTAATTACCAACATTGTGGAGCATCAAAAACTTGGTA 971
Query 720 TGGGATTCCAGGTTCCGCAGCTCTAAAATTTGAAAAGGTGGTTAAAGAGTGTGTGTACAA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 TGGGATTCCAGGTTCCGCAGCTCTAAAATTTGAAAAGGTGGTTAAAGAGTGTGTGTACAA 1031
Query 780 TGATGATATTCTATCAACTAATGGAGAAGATGGAGCCTTTGACGTGCTTCTAGGGAAGAC 839
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1032 TGATGATATTCTATCAACTAATGGAGAAGATGGTGCCTTTGACGTGCTTCTGGGGAAGAC 1091
Query 840 AACTATATTCCCCCCAAAGATTCTGTTGGATCATAATGTGCCAGTGTACAAGGCTGTGCA 899
|||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||
Sbjct 1092 AACTATATTCCCCCCAAAGACTCTGTTGGATCATAATGTGCCAGTGTATAAAGCTGTGCA 1151
Query 900 AAAACCTGGAGAATTCGTCGTCACATTCCCTAGGGCTTATCATGCTGGTTTCAGCCACGG 959
||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1152 AAAACCTGGAGAATTTGTTGTCACATTCCCCAGGGCTTATCATGCTGGTTTCAGCCACGG 1211
Query 960 TTTTAATTGTGGTGAGGCAGTGAACTTTGCGATGGGTGACTGGTTTCCTTTTGGAGCTAT 1019
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1212 TTTTAATTGTGGTGAGGCAGTGAACTTTGCGATGGGTGATTGGTTTCCATTTGGAGCTAT 1271
Query 1020 AGCCAGTTGCCGGTATGCTCATCTTAACAGAGTACCATTGCTTCCTCATGAAGAATTGAT 1079
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1272 TGCCAGTTGCCGGTATGCTCATCTTAACCGAGTACCGTTGCTTCCTCATGAAGAATTGAT 1331
Query 1080 TTGTAAAGAAGCAATGCTCTTAAACTCAAGTTCCAAATCCGAGAATCTGGATTTTACACC 1139
||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1332 TTGTAAAGAGGCAATGCTCTTGAACTCAAGTTCCAAATCCGAGAATCTGGATCTTACACC 1391
Query 1140 TACAGAATTGTTAGGACAACGAAGCATCAAGACTGCATTTGTGCACCTGATTCGTTTTCT 1199
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1392 TACAGAATTGTCAGGACAACGAAGCATCAAGACTGCATTTGTACACCTGATTCGTTTTCT 1451
Query 1200 TCATCTTGCTCGATGGTCTCTAATGAAGTCAGGATTATGCACAGGCCTTGTTTCGAATAC 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1452 TCATCTTGCTCGATGGTCTCTAATGAAGTCAGGATTATGCACAGGCCTTGTTTCGAATAC 1511
Query 1260 ATATGGAACCATAGTCTGCAGTTTGTGTAAACGGGATTGCTATTTGGCATTTATCAACTG 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1512 ATATGGAACCATAGTCTGCAGTTTGTGTAAACGGGATTGCTATTTGGCATTTATCAACTG 1571
Query 1320 CGAGTGTTACTCACATCCCGTCTGTCTCCGTCATGATATTAAAAAGCTTGACCTTCCATG 1379
||||||||||||||| ||||| ||||| ||||||||| ||||||||||||||||||||||
Sbjct 1572 CGAGTGTTACTCACACCCCGTTTGTCTACGTCATGATGTTAAAAAGCTTGACCTTCCATG 1631
Query 1380 TGGGACAACACGTACTCTTTACTTGAGAGATAACATTGAAGACTTGGAAGCTGCTGCAAT 1439
||||||||| | |||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1632 TGGGACAACGCATACTCTTTACTTGAGAGACAACATTGAAGACATGGAAGCTGCTGCAAT 1691
Query 1440 GAAGTTTGAGAAAGAAGATGTAGTTTCAGATTTGATTACAACTGATGAAGACTTATATAA 1499
|||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1692 GAAGTTTGAGAAGGAAGATGGAGTTTCAGATTTGATTACAACTGATGAAGATTTATATAA 1751
Query 1500 GTATCCATCATCAATTACACTTCCAGCTGCGAAAGAAGATGGATATTCACCGTATTCCAC 1559
|||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1752 GTATCCATCATCGATTACACTTCCAGCTGCGAAAGAAGACGGATATACACCGTATTCCAC 1811
Query 1560 TATATACTTTGATTTCTATACCGAGGTAGAGATGACATCTCATGACCAGTTGCAATCTGG 1619
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1812 TATATACTTTGATTTCTATACTGAGGTAGAGATGACATCTCATGACCAGTTGCAATCGGG 1871
Query 1620 AAATTCCGTCATGAGCTATGAAGCAAACGCTTCATGTATCTCCTCAGTTGCTGATGATTA 1679
|||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1872 AAATCCCGTCATGAGTTATGAGGCAAACGCTTCATGTATCTCCTCAGTTGCTGATGATTA 1931
Query 1680 TGAATGCTCTGATTACGTAAATAGACGAGCTAACTGTAGCAGCAGTAGTGATTCAAAGTT 1739
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1932 TGAATGCTCTGATTACGTAAATAGACGAGCTAACTGTAGCAGCAGTAGTGATTCAAAGCT 1991
Query 1740 CTCAGAAGAAGTAGCATGCAGCAGTAACaaaaaaaCTCGGTTCTTCCCTGCGGTTCAAGA 1799
||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1992 CTCGGAAGAAGTAGCATGCAGCAGTAGCAAAAAAACTCGGTTCTTCCCTGTGGTTCAAGA 2051
Query 1800 TGAACAACAACTAGTCGCGGATCAGGAAAGTGATGGATCTGATTCCGAGTGTTTCAGAGT 1859
|||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2052 TGAACAAC---TAGTTGCGGATCAGGAAAGTGATGGATCTGATTCCGAGTGTTTTAGAGT 2108
Query 1860 CAAACGCCGTTCTTCGTTGAAGTTTGAGAACCGAACAGTTGTTGTCGACACAAGAGATTA 1919
||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||| |
Sbjct 2109 CAAACGCCGTTCTTCATTGAAGTTTGAGAACCGAACAGTTGTTCTAGACACAAGAGAGTC 2168
Query 1920 TGACCATCATCAGGAGCTTAAAAGGCTGAAGAAATCGCTTCATCACGAAGGAAGATATAG 1979
||||||||||||||| ||||| || ||||||||||||| |||||||||||||||||||||
Sbjct 2169 TGACCATCATCAGGAACTTAAGAGACTGAAGAAATCGCATCATCACGAAGGAAGATATAG 2228
Query 1980 TAGTAGCAGTAGTGTTAGTAGGCaagaagaagaagaagaagaagaagTGTTAGTAATTTC 2039
||||||||||||||||||||||||||||||||||||||| || | | | |||||||||
Sbjct 2229 TAGTAGCAGTAGTGTTAGTAGGCAAGAAGAAGAAGAAGATGA-G---T-T-AGTAATTTC 2282
Query 2040 AAACAGGAAAGAAACTCAGCAACAAAGTGACGTGAAGATGCAGAAGAAGAGGATCGAGAA 2099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2283 AAACAGGAAAGAAACTCAGCAACAAAGTGACGTGAAGATGCAGAAGAAGAGGATCGAGAA 2342
Query 2100 TCAGTTTGGTGGCTTTAAACGTCTGAAAGTGAAAGGGCTAATAAAGCCGTAA 2151
||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2343 TCATTTTGGTGGCTTTAAACGTCTGAAAGTGAAAGGGCTAATAAAGCCGTAA 2394
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109135984830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5