BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948263
Length=749
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46780.1 | Symbols: | VQ motif-containing protein | chr5:18... 1064 0.0
> AT5G46780.1 | Symbols: | VQ motif-containing protein | chr5:18979041-18980057
FORWARD LENGTH=1017
Length=1017
Score = 1064 bits (576), Expect = 0.0
Identities = 705/765 (92%), Gaps = 18/765 (2%)
Strand=Plus/Plus
Query 1 TTTTGTTTGTTTGTTTCAGGTTTAATAATGGATGATCAGAGAAATCGTGTTAATGATTAT 60
||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| ||
Sbjct 169 TTTTGTTTGTTTGTTTCAGTTTTAATAATGGATGATCAGAGTAATCGTGGTAATGATAAT 228
Query 61 CATAATAATGATCATCATCAT--T-ATCTAGGTGTGAATAAGATGGGAAAAAACATCCGT 117
||||||||||||||||||||| | |||| |||||||||||||||||||||||||| |||
Sbjct 229 CATAATAATGATCATCATCATCATCATCTTGGTGTGAATAAGATGGGAAAAAACATTCGT 288
Query 118 AAAGATCCATCAAACCAGCAAAATCAACAGCAAAACCCTCAAGCTTTGGTTTACAACATC 177
||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 289 AAAGATCCACCAAACCAACAAAATCAACAACAAAACCCTCAAGCTTTGGTTTACAACATC 348
Query 178 AACAAAACCGATTTCAGATCCATTGTTCAACAGTTAACCGGACTTGGTTCATCTTCTTCA 237
||||||||||||||||||||||||||||| ||| |||||||||| |||||| |||||||
Sbjct 349 AACAAAACCGATTTCAGATCCATTGTTCAGCAGCTAACCGGACTCGGTTCAACTTCTTCC 408
Query 238 GTCAATCCTCCGCAAGCAAACCCA-CCAAAACCTCCAAATTCACGGTTGGTTAAAGTTAG 296
||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 409 GTCAATCCTCCGCAAACAAA-CCATCCAAAACCTCCAAATTCACGGTTGGTTAAAGTTAG 467
Query 297 ACCGGCTCCTTTGACCCAACTCAACCATCCTCCACCTCCACCTCCACCTCC---G--G-T 350
||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 468 ACCGGCTCCTTTGACCCAACTCAACCATCCTCCACCTCCACCTCCACCTCCACCGCCGGT 527
Query 351 TCAATCGGTTCCAATTGCATCTGAACCGGTTCAGCCTGTTAACCAAGTTTCG-GTTAACC 409
|||||| ||||||||||||||||||||||||||||||||||||||| ||||| || ||||
Sbjct 528 TCAATCAGTTCCAATTGCATCTGAACCGGTTCAGCCTGTTAACCAATTTTCGAGT-AACC 586
Query 410 CGGCCGAATCTCCCATCTCCGCTTATATGCGTTACCTAATCGAATCAAGCCCTGTTGGAA 469
|||| |||||||||||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct 587 CGGCTGAATCTCCCATCTCGGCCTATATGCGTTACCTAATCGAATCAAGCCCTGTCGGAA 646
Query 470 ACCGAGCGCAGCCACAAAACCAAAATCCGGTTCAACCATCAACCGGTTTATTTCCTTCAC 529
|||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 647 ACCGAGTGCAGCCACAAAACCAAAACCCGGTTCAACCATCAACCGGTTTATTTCAGTCAC 706
Query 530 ATCAAACCGGTCCTAATCCAATGTCATTCCAGTCTCCAGCTTCACAGTTTGTTTTGTCAC 589
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 707 ATCAAACCGGTCCTAATCCAATGTCGTTCCAGTCTCCAGCTTCACAGTTTGCTTTGTCAC 766
Query 590 CGCAGCCAAGATCGCCATTTCCATTGTTCTCACCCAATTTCGCGTTCTCGCCGCGGTTTT 649
||||||||||||| |||||||| ||||||||||||||||| || || || || |||||||
Sbjct 767 CGCAGCCAAGATCACCATTTCCTTTGTTCTCACCCAATTTTGCATTTTCACCTCGGTTTT 826
Query 650 TAGGCGGTAC---CGAATCGCTGCCACCGCCATCACCCGGTTTTTTCTTCCCATTGCTCA 706
||||||||| ||||||||| |||||||||||||| ||||||||||| |||||||| |
Sbjct 827 TAGGCGGTAGTAACGAATCGCTACCACCGCCATCACCGGGTTTTTTCTTTCCATTGCTTA 886
Query 707 GTCCATTATGGAAAAATCAATAGCT-AAT-TAGTAGTAGTATATT 749
||||||||||||||||||||||| | ||| |||||| ||| ||||
Sbjct 887 GTCCATTATGGAAAAATCAATAGTTGAATATAGTAGCAGTGTATT 931
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36369522428
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5