BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg948264 Length=442 Score E Sequences producing significant alignments: (Bits) Value AT5G46770.1 | Symbols: | unknown protein; Has 30201 Blast hits... 689 0.0 > AT5G46770.1 | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:18977408-18978160 FORWARD LENGTH=753 Length=753 Score = 689 bits (373), Expect = 0.0 Identities = 420/442 (95%), Gaps = 5/442 (1%) Strand=Plus/Plus Query 1 AAGGAGATCATAAAAAGGCCATGAGCCTAAATTGTCTAACATGTCAAGCCCTTCCACGAA 60 ||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 67 AAGGAGATCGCAAAAAAGCCATGAGCCTAAATTGTCTATCATGTCAAGCCCTTCCACGAA 126 Query 61 CAGATTCCAACAAAAATGTTGATCTCTCCGGTCCTGGACCACCAAAGGTCGAGATTAACC 120 |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct 127 CAGATTCCAACAAAGATGTTGATCTCTCCGGTCCTGGACCACCAAGGGTCGAGATTAACA 186 Query 121 ATGTTCTAGGTAAAACATGTTGTGTAGATCCTATTGGTGGAAGAAATTGGTCAGGGAATT 180 |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| Sbjct 187 ATGTTCTAGGTAAAACATGTTGTGTAAATCCTATTGGTGGGAGAAATTGGTCAGGGAATT 246 Query 181 TGAGTCCTAGGATCTATGAGAAGATTGGACGGTCAGGATCGTCTTTAGCCCATAAGATGA 240 |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 247 TGAGTCCTAGGATCTATGAGAAGATTGGACGGCCAGGATCGTCTTTAGCGCATAAGATGA 306 Query 241 AGAAGGTGAAAAAGATTCATCACATTAGGCTAAGTGGTCCTGTTGGTGCTAGCCCTAGCA 300 ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 307 AGAAGGTGAAAAAGATTCATCACGTTAGGCTAAGTGGTCCTGTTGGTTCTAGCCCTAGCA 366 Query 301 ATGGACCGACCCGGCCCGAACAACCAAAGCTTGTAAGGAGCACTGGAGTCCGAAGGAATT 360 ||| ||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 367 ATGTACCAACCCGGCCGGAACAACCAAAGCTCGTAAGGAGCACTGGAGTCCGAAGGAATT 426 Query 361 GGAGTTTTGAGAATTTGAGAGATCAAGGATTAATAGAAGAAAAAAGGAAGATTAACATAT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 427 GGAGTTTTGAGAATTTGAGAGATCAAGGATTAATAGAAGAAAAAAGGAAGATTAACATAT 486 Query 421 GA-TCATGATTGATCA-TGATT 440 || | || || ||||| ||||| Sbjct 487 GAAT-AT-AT-GATCAATGATT 505 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21011919082 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5