BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948264
Length=442
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46770.1 | Symbols: | unknown protein; Has 30201 Blast hits... 689 0.0
> AT5G46770.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:18977408-18978160
FORWARD LENGTH=753
Length=753
Score = 689 bits (373), Expect = 0.0
Identities = 420/442 (95%), Gaps = 5/442 (1%)
Strand=Plus/Plus
Query 1 AAGGAGATCATAAAAAGGCCATGAGCCTAAATTGTCTAACATGTCAAGCCCTTCCACGAA 60
||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 67 AAGGAGATCGCAAAAAAGCCATGAGCCTAAATTGTCTATCATGTCAAGCCCTTCCACGAA 126
Query 61 CAGATTCCAACAAAAATGTTGATCTCTCCGGTCCTGGACCACCAAAGGTCGAGATTAACC 120
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 127 CAGATTCCAACAAAGATGTTGATCTCTCCGGTCCTGGACCACCAAGGGTCGAGATTAACA 186
Query 121 ATGTTCTAGGTAAAACATGTTGTGTAGATCCTATTGGTGGAAGAAATTGGTCAGGGAATT 180
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 187 ATGTTCTAGGTAAAACATGTTGTGTAAATCCTATTGGTGGGAGAAATTGGTCAGGGAATT 246
Query 181 TGAGTCCTAGGATCTATGAGAAGATTGGACGGTCAGGATCGTCTTTAGCCCATAAGATGA 240
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 247 TGAGTCCTAGGATCTATGAGAAGATTGGACGGCCAGGATCGTCTTTAGCGCATAAGATGA 306
Query 241 AGAAGGTGAAAAAGATTCATCACATTAGGCTAAGTGGTCCTGTTGGTGCTAGCCCTAGCA 300
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 307 AGAAGGTGAAAAAGATTCATCACGTTAGGCTAAGTGGTCCTGTTGGTTCTAGCCCTAGCA 366
Query 301 ATGGACCGACCCGGCCCGAACAACCAAAGCTTGTAAGGAGCACTGGAGTCCGAAGGAATT 360
||| ||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 367 ATGTACCAACCCGGCCGGAACAACCAAAGCTCGTAAGGAGCACTGGAGTCCGAAGGAATT 426
Query 361 GGAGTTTTGAGAATTTGAGAGATCAAGGATTAATAGAAGAAAAAAGGAAGATTAACATAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 GGAGTTTTGAGAATTTGAGAGATCAAGGATTAATAGAAGAAAAAAGGAAGATTAACATAT 486
Query 421 GA-TCATGATTGATCA-TGATT 440
|| | || || ||||| |||||
Sbjct 487 GAAT-AT-AT-GATCAATGATT 505
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21011919082
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5