BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948265
Length=1986
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46760.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-bin... 1472 0.0
AT4G17880.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-bin... 292 7e-78
> AT5G46760.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-binding
family protein | chr5:18974231-18976009 FORWARD LENGTH=1779
Length=1779
Score = 1472 bits (797), Expect = 0.0
Identities = 932/994 (94%), Gaps = 21/994 (2%)
Strand=Plus/Plus
Query 21 ATGAACGGCACAACATCATCAATCAACTTCTTAACCTCCGACGATGACGCGT---CGGCG 77
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1 ATGAACGGCACAACATCATCAATCAACTTCTTGACCTCCGACGATGACGCGTCGGCGGCG 60
Query 78 GCTATGGAAGCTTTCATCGGAACAAACCACCACTCATCTCTCTTTCCTccaccaccacaa 137
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 GCTATGGAAGCTTTCATTGGAACAAACCACCACTCATCTCTCTTTCCTCCACCACCAC-A 119
Query 138 ccaccaccaccaccTTCTTTTCCTCAAACTCAATTCAACGAAGATACTCTTCAACAACGT 197
| || |||| ||||| |||| |||||||||||||||||||||||||||
Sbjct 120 --A-CA--ACCA---------CCTCAGCCTCAGTTCAACGAAGATACTCTTCAACAACGT 165
Query 198 CTCCAAGCTTTAATCGAATCCGCCGGAGAAAACTGGACTTACGCTATCTTCTGGCAGATC 257
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 166 CTCCAAGCTTTAATAGAATCCGCCGGAGAAAACTGGACTTACGCTATCTTCTGGCAGATC 225
Query 258 TCACACGACTTCGATTCTTCCACCGGAGACAACACTGTAATCCTCGGCTGGGGAGATGGA 317
||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||||||
Sbjct 226 TCACACGACTTCGATTCATCCACCGGAGATAACACAGTGATCCTCGGCTGGGGAGATGGT 285
Query 318 TACTACAAAGGagaagaagacaaagagaagaagaagaaCAACGCGAACACGGCGGAGCAA 377
|||||||||||||| ||||| ||||||||||||||||||||| | |||||||||||||||
Sbjct 286 TACTACAAAGGAGAGGAAGATAAAGAGAAGAAGAAGAACAACACCAACACGGCGGAGCAA 345
Query 378 GAGCACCGGAAAAGAGTAATCCGTGAGCTTAATTCGTTAATCTCCGGCGGAATTGGAGTT 437
||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 346 GAGCATCGGAAAAGAGTAATACGTGAGCTTAACTCGTTAATCTCCGGCGGAATTGGGGTT 405
Query 438 TCCGATGAATCAAACGATGAAGAAGTAACAGATACTGAATGGTTCTTCTTAGTTTCGATG 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 TCCGATGAATCAAACGATGAAGAAGTAACAGATACTGAATGGTTCTTCTTAGTTTCGATG 465
Query 498 ACTCAAAGCTTCGTTAACGGTGTTGGACTTCCCGGAGAATCTTTCTTAAACTCTCGTGTG 557
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 466 ACTCAAAGCTTCGTTAACGGTGTTGGTCTCCCCGGAGAATCTTTCTTAAACTCTCGTGTG 525
Query 558 ATTTGGTTATCTGGGTCGGGTTCTTTAACCGGGTCGGGTTGTGAAAGAGCGGGTCAAGGT 617
||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 526 ATTTGGTTATCCGGGTCTGGTGCTTTAACCGGGTCGGGTTGTGAAAGAGCGGGTCAAGGT 585
Query 618 CAGATTTACGGGTTGAAGACGATGGTGTGTATCGCGACGCAAAACGGCGTCGTTGAGCTT 677
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 586 CAGATTTACGGGTTAAAGACGATGGTGTGTATCGCGACTCAAAACGGCGTCGTTGAGCTT 645
Query 678 GGTTCGTCGGAAGTTATAAGTCAAAGCTCAGATCTGATGGATAAAGTTAATAACTTGTTT 737
||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 646 GGTTCGTCGGAGGTTATAAGTCAAAGCTCAGATCTGATGCATAAAGTTAACAACTTGTTT 705
Query 738 AACTTCAACAACGGTGGTAGTGGTAACAATGGTGGTGAAGCTTCTTCTTGGGGTTTTAAT 797
|| |||||||||||| | |||| |||||||||| |||||||||||| ||||||||||||
Sbjct 706 AATTTCAACAACGGT-G--GTGGAAACAATGGTGTTGAAGCTTCTTCGTGGGGTTTTAAT 762
Query 798 CTGAATCCAGATCAAGGAGAGAATGATCCAGCTTTGTGGATTAGTGAACCGACGAACACC 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 CTGAATCCAGATCAAGGAGAGAATGATCCAGCTTTGTGGATTAGTGAACCGACGAACACC 822
Query 858 GGAATCGAATCTCCGGCGAGGGTTAGTAATGGTAATAACTCGAATTCGAATTCTAAGTCT 917
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 823 GGAATCGAATCTCCGGCGAGGGTTAATAATGGTAATAACTCGAATTCTAATTCTAAGTCT 882
Query 918 GATTCTCATCAAATTTCGAAGCTTGATAAGAATGATATTAGCTCTGTGGAGAATCAGAAT 977
||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 883 GATTCTCATCAAATTTCTAAGCTTGAGAAGAATGATATTAGCTCTGTAGAGAATCAGAAT 942
Query 978 CGTCAAAGTTCTTGTCTTGTTGAGAGAGATTTGA 1011
||||||||||| |||||||| |||| ||||||||
Sbjct 943 CGTCAAAGTTCGTGTCTTGTCGAGAAAGATTTGA 976
Score = 1249 bits (676), Expect = 0.0
Identities = 765/808 (95%), Gaps = 6/808 (1%)
Strand=Plus/Plus
Query 1046 CTTTCAAGGTGGGTTGTTGAAATCGAATGAGACTTTGAGTTTCTGTGGTAACGAGAGTAG 1105
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 978 CTTTCAAGGTGGGTTGTTGAAATCTAATGAGACTTTGAGTTTCTGTGGTAATGAGAGTAG 1037
Query 1106 CAAGAAGAGGTCTCCGGTTTCGAAAGGGAGTAATAATGATGAAGGGATGCTTTCTTTTAG 1165
|||||||| || |||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 1038 TAAGAAGAGAACTTCGGTATCTAAAGGGAGTAATAATGATGAAGGGATGCTTTCGTTTAG 1097
Query 1166 TACTGTGGTTCGATCCGCTGCGAAATCGGTTGATTCGGATCATTCTGATCTTGAAGCATC 1225
|||||||||| |||| |||||| || ||||||||||||||||||||||||||||||
Sbjct 1098 TACTGTGGTTAGATCAGCTGCG-AA-----TGATTCGGATCATTCTGATCTTGAAGCATC 1151
Query 1226 GGTTGTTAAGGAAGCGATTGTTGTTGAGCCACCGGAGAAGAAGCCGAGGAAACGGGGGAG 1285
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 TGTTGTTAAGGAAGCGATTGTTGTTGAGCCACCGGAGAAGAAGCCGAGGAAACGGGGGAG 1211
Query 1286 GAAACCGGCGAATGGgagagaagagccgttgaatcatgttgaagcagagaggcagagaag 1345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1212 GAAACCGGCGAATGGGAGAGAAGAGCCGTTGAATCATGTTGAAGCAGAGAGGCAGAGAAG 1271
Query 1346 agagaagttaaaccagagaTTTTATTCTTTGAGAGCTGTGGTTCCTAATGTTTCGAAGAT 1405
||||||||||||||||||||| || |||||||||||||| |||||||| |||||||||||
Sbjct 1272 AGAGAAGTTAAACCAGAGATTCTACTCTTTGAGAGCTGTTGTTCCTAACGTTTCGAAGAT 1331
Query 1406 GGATAAAGCTTCTCTTCTCGGAGATGCTATTTCGTATATCAATGAGCTTAAGTCGAAGCT 1465
|||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1332 GGATAAAGCTTCGCTTCTCGGAGACGCGATTTCGTATATCAATGAGCTTAAGTCGAAGCT 1391
Query 1466 GCAACAAGCGGAATCTGATAAAGAGGAGATTCAGAAGAAGCTAGATGGGATGAGTAAGGA 1525
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1392 GCAGCAAGCGGAGTCTGATAAAGAGGAGATTCAGAAGAAGCTAGATGGGATGAGTAAGGA 1451
Query 1526 AGGAAATAATGGGAAAGGTGGCGGGTCGAGGGCGAAAGAACGGAAAAGTTCGAATCAAGA 1585
||| ||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1452 AGGGAATAATGGGAAAGGTTGCGGGTCAAGGGCAAAAGAACGGAAAAGTTCGAATCAAGA 1511
Query 1586 TTCTACGGCGAGTTCTATAGAAATGGAGATTGATGTGAAGATCATAGGTTGGGATGTGAT 1645
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1512 TTCTACGGCGAGTTCTATAGAAATGGAGATTGATGTTAAGATCATAGGTTGGGATGTGAT 1571
Query 1646 GATACGTGTACAATGCAGCAAGAAGGATCATCCCGGTGCTAGATTCATGGAAGCGCTCAA 1705
|||||||||||||||| ||||||| ||||||||||||||||| ||||||||||| || ||
Sbjct 1572 GATACGTGTACAATGCGGCAAGAAAGATCATCCCGGTGCTAGGTTCATGGAAGCACTTAA 1631
Query 1706 GGAACTGGATTTGGAAGTGAATCACGCGAGTTTATCCGTTGTGAATGATTTGATGATTCA 1765
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1632 GGAATTGGATTTGGAAGTGAATCATGCGAGTTTATCCGTTGTGAATGATTTGATGATTCA 1691
Query 1766 ACAAGCTACCGTGAAGATGGGGAGCCAGTTTTTCAATCATGACCAGCTTAAAGTTGCTTT 1825
||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1692 ACAAGCTACGGTGAAGATGGGGAGCCAATTTTTCAATCATGACCAGCTCAAAGTTGCTTT 1751
Query 1826 AATGACGAAAGTCGGAGAAAACTATTGA 1853
|||||||||||||||||||||||||||
Sbjct 1752 GATGACGAAAGTCGGAGAAAACTATTGA 1779
> AT4G17880.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-binding
family protein | chr4:9933366-9935586 REVERSE LENGTH=2221
Length=2221
Score = 292 bits (158), Expect = 7e-78
Identities = 535/709 (75%), Gaps = 57/709 (8%)
Strand=Plus/Plus
Query 166 CTCAATTCAACGAAGATACTCTTCAACAACGTCTCCAAGCTTTAATCGAATCCGCCGGA- 224
||||| |||||||||||| ||| || |||||||||||||||||||||||| | | |
Sbjct 282 CTCAAGTCAACGAAGATAATCTCCAGCAACGTCTCCAAGCTTTAATCGAAGGAG-CAAAC 340
Query 225 GAAAACTGGACTTACGCTATCTTCTGGCAGATC-TCACACGACTT---C---G-ATTCTT 276
|| |||||||||||||| | |||||||| ||| || |||| || | | | |
Sbjct 341 GAGAACTGGACTTACGCCGTGTTCTGGCA-ATCATCTCACGGTTTCGCCGGAGAAGACAA 399
Query 277 CCACCGGAGACAACACTGTAATCCTCGGCTGGGGAGATGGATACTACAAAGGagaagaag 336
| || | ||||||| || | | || ||||||||||| || ||||||||||||||||
Sbjct 400 CAACAACA-ACAACACAGTGTTGTTAGGTTGGGGAGATGGTTATTACAAAGGAGAAGAAG 458
Query 337 acaaag---ag-aagaagaagaaC-AA--C-GCGAACACGGCGGAGCAAGAGCACCGGAA 388
| ||| || |||||||| | | || | || | | || || |||||||| || ||
Sbjct 459 A-GAAGTCTAGAAAGAAGAA-ATCAAATCCAGCTAGTGCAGCTGAACAAGAGCATCGTAA 516
Query 389 AAGAGTAATCCGTGAGCTTAATTCGTTAATCTCCGGCGGAATTGGAGTTTCCGATGAATC 448
||||| || | ||||| || || ||||||||||| || | |||| |||||| |
Sbjct 517 GAGAGTGATTAGAGAGCTCAACTCTTTAATCTCCGGTGGTGTAGGAGGAGGAGATGAAGC 576
Query 449 -AAACGATGAAGAAGTAACAGATACTGAATGGTTCTTCTTAGTTTCGATGACTCAAAGCT 507
| ||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||
Sbjct 577 TGGA-GATGAAGAAGTTACAGATACTGAATGGTTCTTCTTAGTTTCAATGACACAGAGCT 635
Query 508 TCGTTAACGGTGTTGGACTTCCC-GGAGAATCTTTCTTAAACTCTCGTGT-GATTTGGTT 565
| || || ||| ||| || || || || |||||| ||| || | |||||||||
Sbjct 636 TTGTCAAGGGTACTGGT-TTACCTGGTCAAGCTTTCTCAAATTCA-GACACGATTTGGTT 693
Query 566 ATCTGGGTCGGGTTCTTTAACCGGGTCGGGTTGTGAAAGAGCGGGTCAAGGTCAGATTTA 625
|||||| || | ||||| | || || ||||||| ||||| ||||||||||||||||
Sbjct 694 ATCTGGTTCTAATGCTTTAGCTGGATCAAGTTGTGAGAGAGCTCGTCAAGGTCAGATTTA 753
Query 626 CGGGTTG-AAGACGATGGTGTGTATCGCGAC-GCAAAACGGCGTCGTTGAGCTTGGTTCG 683
||||| || || ||||||||| | ||||| | | || || ||||||||||||||||||
Sbjct 754 TGGGTTACAA-ACAATGGTGTGTGTAGCGACAG-AGAATGGTGTCGTTGAGCTTGGTTCG 811
Query 684 TCGGA-AGTTATA-AGTCAAAGCTCAGATCT-GATGGATAAAGTTAATAACTTGTTT-AA 739
||||| | |||| | |||||| |||||||| | || |||||||| | | ||| ||| ||
Sbjct 812 TCGGAGA-TTATTCA-TCAAAGTTCAGATCTTGTTG-ATAAAGTTGACACCTT-TTTCAA 867
Query 740 CTTCAACAACGGTGGTAGTGGTAACAATGGTGGTGAAGCTTCTTCTTGGG-GTTTTAATC 798
|| ||||| |||||| ||| || | | || | ||||| ||| |||| |||
Sbjct 868 TTTTAACAATGGTGGTGGTG--AA---T--T--TG--G-TTCTT---GGGCGTTT-AATT 911
Query 799 TGAATCCAGATCAAGGAGAGAATGATCCAGCTTTGTGGATTAGTGAACC 847
|||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 912 TGAATCCAGATCAAGGAGAGAATGATCCAGGTTTGTGGATTAGTGAACC 960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98393068200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5