BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948267
Length=2217
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46740.1 | Symbols: UBP21 | ubiquitin-specific protease 21 |... 2560 0.0
> AT5G46740.1 | Symbols: UBP21 | ubiquitin-specific protease 21
| chr5:18965271-18968742 REVERSE LENGTH=2588
Length=2588
Score = 2560 bits (1386), Expect = 0.0
Identities = 1825/2030 (90%), Gaps = 58/2030 (3%)
Strand=Plus/Plus
Query 193 GAACGCAGATGAGTCTTCCTCTTCTCCGTCAGATAAAACCCTAACTACACCACCAGCTCA 252
|||| ||||||||||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct 493 GAACCCAGATGAGTCTTCCTCTTCTCCGTCAGATAAAACCCTAATTGCGCCACCAGCTCA 552
Query 253 GATTTCGCCTGTTAGCAACAACAATCTTCTCCAAATCACGAGTACGTCAGATTCGTATCT 312
|||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||
Sbjct 553 GATTTCGCCTGTTAGCAACAACAATCATCTCCGGATCACGAACACGTCAGATTCGTATCT 612
Query 313 ATATTGTCCACCAAGGAGATACATAGAGAATAATGACGGTCAAAGCGACGACGATGACCT 372
||| ||||||||||||||||||| ||| | || | ||||||| ||||| || ||
Sbjct 613 TTATCGTCCACCAAGGAGATACATCGAG--T-AT----G--AAAGCGATGACGACGAGCT 663
Query 373 TACTAAGATTGAGCCAACAAAACCACTTCAGCTCTCATGGTGGTATCCGAGAATTGAACC 432
|| |||||| || ||||||||||| || ||| | ||||||||||||||||| ||||||||
Sbjct 664 TAATAAGATGGAACCAACAAAACCTCTACAGTTATCATGGTGGTATCCGAGGATTGAACC 723
Query 433 CACCGGTGTTGGTGCTGGATTGTATAATTCAGGCAACACTTGTTTCATAGCTTCTGTGTT 492
|||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 724 CACCGGTGTTGGGGCTGGGCTATATAATTCAGGCAACACTTGTTTCATAGCTTCTGTGTT 783
Query 493 GCAATGCTTCACTCATACTGTGCCTCTTATTGAGAGTCTTCGTTCATACATGTATCAAAA 552
|| |||||||||||||||||||||||||| || ||||||||||||| ||||||| |||
Sbjct 784 ACAGTGCTTCACTCATACTGTGCCTCTTATCGATAGTCTTCGTTCATTCATGTATGGAAA 843
Query 553 CCCTTGCAACTGTGGCAATGAGAAGTTCTGTGTTATGCAAGCTCTTCGAGATCATATCGA 612
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 844 CCCTTGCAACTGTGGAAATGAGAAGTTCTGTGTAATGCAAGCTCTTCGAGATCATATTGA 903
Query 613 GCTTGCTCTCAGGTCTTCAGGACATGGAATAAACATTGATAGATTTCGTGATAACCTGAC 672
||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 904 GCTTGCTCTGAGGTCTTCAGGATATGGAATAAACATTGATAGATTTCGTGATAACTTGAC 963
Query 673 TCATTTTTCATCTGATTTTATGATAAACCACCAAGAAGATGCACATGAGTTTCTACAGTC 732
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 964 TTATTTTTCATCTGATTTTATGATAAACCACCAAGAAGATGCACACGAGTTTCTACAATC 1023
Query 733 GTTTTTAGATAAGCTAGAGAGATGTTGTTTAGATCCTAAGAATGAGCCTGGCTCTATCTT 792
||| | |||||| ||||||||||||||||||||||||||||| ||| ||||||| |||
Sbjct 1024 ATTTCTGGATAAGTTAGAGAGATGTTGTTTAGATCCTAAGAATCAGCTTGGCTCTGTCTC 1083
Query 793 ATCTCAAGATTTTAACATTGTTGACAATGTCTTTGGTGGCGGTCTCATGAGTACGCTTTG 852
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 ATCTCAAGATTTGAACATTGTTGACAATGTCTTTGGTGGCGGTCTCATGAGTACGCTTTG 1143
Query 853 TTGCTGCAATTGCAATTCCGTTTCCAACACATTTGAACCTTCTCTTGGATGGAGTCTGGA 912
||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1144 TTGTTGCAATTGTAATTCTGTTTCCAACACGTTTGAACCTTCTCTTGGATGGAGTCTGGA 1203
Query 913 AATTGAAGATGTTGATAACCTCTGGAGTGCTCTAGATTCCTTTACATGTGTAGAAAAACT 972
||| ||||||||| ||| |||||||| |||||||| |||||||||||||| ||||||||
Sbjct 1204 AATAGAAGATGTTAATACCCTCTGGAAAGCTCTAGAATCCTTTACATGTGTCGAAAAACT 1263
Query 973 TGAGGACCAGTTAACATGTGATAACTGTAAGGAGAAAGTCACAAAGGAGAAGCAACTTAA 1032
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 TGAGGACCAGTTAACATGTGATAACTGTAAGGAGAAAGTCACAAAGGAGAAGCAACTTAG 1323
Query 1033 GTTCGATCAGTTGCCGCCGGTTGCTACTTTCCATCTTAAGAGATTCAAGAATGATGGAGT 1092
||||||| ||||||||||||||||||| |||||||||||||| || | |||||||||||
Sbjct 1324 GTTCGATAAGTTGCCGCCGGTTGCTACATTCCATCTTAAGAGGTTTACTAATGATGGAGT 1383
Query 1093 TACTATGGAGAAGATCTTCGAGCATGTTGAGTTCCCTTTGGAGTTGGATTTGCTCCC-TT 1151
||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||| ||
Sbjct 1384 TACTATGGAGAAGATCTTCGATCATATTGAGTTCCCTTTGGAGTTGGATTTG-TCCCCTT 1442
Query 1152 TCATGAGCGGTAACCAAAATCCTGAGGTTTCCACAAAATATCATCTTTACGCCTTTGTGG 1211
|||||||| ||||||| |||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1443 TCATGAGCAGTAACCATGATCCTGAGGTTTCCACAAGATATCATCTTTATGCCTTTGTGG 1502
Query 1212 AGCATATTGGGATTAGAGCAACTTTTGGTCATTACTCCACTTATGTGAGATCAGCTCCTG 1271
|||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||
Sbjct 1503 AGCATATTGGGATTAGAGCAACCTTTGGTCATTATTCCTCTTATGTGAGATCAGCTCCTG 1562
Query 1272 AGACCTGGCATAATTTTGATGACTCCAAGGTCACCAGAATCAGCGAAGACAGAGTTCTAT 1331
|||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1563 AGACATGGCATAATTTTGATGACTCCAAGGTCACGAGAATCAGCGAAGAGAGAGTTCTAT 1622
Query 1332 CCCGTCCTGCGTATATATTATTTTATGCAAGAGAAGGAACTCGTTGGTTTTCCAGTACTT 1391
|||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1623 CCCGTCCTGCTTATATATTGTTTTATGCAAGAGAAGGAACTCCTTGGTTTTCCAGTACTT 1682
Query 1392 TTGAACAGTTGAAGGCAGTGTTTGAAGCTACTCCGTTACATTTTTCACCAA-ACTCAGTG 1450
|||||||||||||| ||||||||||||||||||||||||||||||||||| | || |||
Sbjct 1683 TTGAACAGTTGAAGACAGTGTTTGAAGCTACTCCGTTACATTTTTCACCAGTA-TCTGTG 1741
Query 1451 CTTGAAAACAGTTATGATAGTGTTGGTAATTCTAACAAAGACTGCAACGACTCGGGGGGA 1510
||||| |||||||| || ||||||| |||||| | |||| |||||||||||| | ||||
Sbjct 1742 CTTGATAACAGTTACGAGAGTGTTGATAATTCCAGTAAAGCCTGCAACGACTCAGTGGGA 1801
Query 1511 GTGTCGATCCCTGATGGAAAGTGGTCAGAT-CTTTGCTGTCATGAGCCAAAAGAAGAAGT 1569
|| ||||||||||||| ||| ||| ||||| ||| ||||||| ||||||||||| |||||
Sbjct 1802 GTATCGATCCCTGATGTAAAATGGCCAGATTCTT-GCTGTCAAGAGCCAAAAGAGGAAGT 1860
Query 1570 GTTTCATTCAGCTGAGTCTAACAACAGTGAAGATTCTTCAGCCATGATTGATGCTCTCGA 1629
||| |||||||| ||||||| ||||| |||||||||||| |||||||||||||||||||
Sbjct 1861 GTTCCATTCAGCCGAGTCTAGCAACAATGAAGATTCTTCGGCCATGATTGATGCTCTCGG 1920
Query 1630 GTCACCTGAGGCTGATGAATCTGAGAAACCTTTTGTTGAAACCTCTCAACAGAGAGAACC 1689
||||||| | | | ||||||||||| |||| ||||||||| ||||||| ||| ||
Sbjct 1921 GTCACCT----C--A--A-TCTGAGAAACCATTTGCTGAAACCTCCCAACAGACAGAGCC 1971
Query 1690 TGAGTCATGTCCAGCTGGAAACAAAGCTAACATCGATGAATCTGAGAAGCCATTTACTGA 1749
||||||||||||| ||| |||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 1972 TGAGTCATGTCCAACTGAAAACAAAGCTTACATCGATAAATCTGAGAAGCCATTTGCTGA 2031
Query 1750 GACCTCTCAACAGAAAGAACCTGAGCCAAGTCCAGCTGCTGACAGAGCTAGCATTGATGC 1809
||||||||||| |||||||||| ||||| | |||||||||||||||||| |||||
Sbjct 2032 GACCTCTCAACCGAAAGAACCTAAGCCAT-T-----TGCTGACAGAGCTAGCATCGATGC 2085
Query 1810 CCCTCATGTCCCTCTGCTCAAGGTTCAGAACCAAGACATTTCTCCAAAACGCAAAGCTGG 1869
||||| || | || ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 2086 CCCTC-TG-C--TC-----AAGGTTCAGAATCAAGACATATCTCCAAAACGCAAAGCTGG 2136
Query 1870 TGAGAGAGCTACGCTCGGTGGACCGAAGCGCAAGGT-TCAAAAACCAAATTCCCATCCGA 1928
|||||||||||||||||||||||| |||| |||| | |||||||||||||||||||| ||
Sbjct 2137 TGAGAGAGCTACGCTCGGTGGACCTAAGCTCAAG-TATCAAAAACCAAATTCCCATCAGA 2195
Query 1929 AACGCCAAGGAAGCTTTCAGATTCAACGTGCGCATTTGCAAACTAAGAACCAAGAAGAAA 1988
|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2196 AACGCCAAGGAACCTTTCAGATTCAACGTGCGCATTTGCAAACTAAGAAGCAAGAAGAAT 2255
Query 1989 CTCGTAGAACAAAGCGGGCGGCGTATAGAAGCAATGTTGCTGCTTCTGCTCCAGATCCTA 2048
|||||| |||||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 2256 CTCGTAAAACAAAGCGGCCGTTGTTTAGAAGCAATGTTGCTGCTTCTGCTCCAGATCCTA 2315
Query 2049 AGTACAGAAATCATGCT-TATTCATATCTCAACAGGGTCCAGACACCTCGCGCTCGAATG 2107
|||||| |||||||||| | ||||||||||||||||| |||||||||||||||||||| |
Sbjct 2316 AGTACAAAAATCATGCTCT-TTCATATCTCAACAGGGCCCAGACACCTCGCGCTCGAAAG 2374
Query 2108 CTTGCTAATGCTTTGGGTGGTTCTCCGACCAAGAAAAAGAAAATCTCAACAGGGCCCAGA 2167
|| |||||||||||| ||| ||||||||||||||||||||||| ||| | | | |
Sbjct 2375 CTCGCTAATGCTTTGAGTGATTCTCCGACCAAGAAAAAGAAAAGCTCTA-A---C--A-- 2426
Query 2168 CACATGAAAAGATCAACTATTAAACTTTGAAGAGTTAGCTATTAGAAAAT 2217
||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 2427 ----TGAGAAGATC---TATTAAACTTTGAAGAGTTAGCTATTAGAAAAT 2469
Score = 309 bits (167), Expect = 7e-83
Identities = 215/238 (90%), Gaps = 4/238 (2%)
Strand=Plus/Plus
Query 1 TCCGATCTGGGTTTCGTTGTTAATGGCGGAATTTAGTGACCCACCACCTTCAAATCTCTC 60
|||| ||| ||||| ||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 229 TCCGTTCTCGGTTTTGTTGTTAATGGCGGAATTTAGTGACCCACCACCATCTAATCTCTC 288
Query 61 TTCTTCTCCTAAATTAGCTAAACCCAACCAAACCCTAGATGAGTCCACACCAACCGCTCC 120
|||||||| ||||||| |||||||||||||||||||||||||||| |||||||||| ||
Sbjct 289 TTCTTCTCATAAATTAACTAAACCCAACCAAACCCTAGATGAGTCTTCACCAACCGCGCC 348
Query 121 AATTCGAGACCTTGTTACTCACTCGCTCTCTCTTTCGTCACCGATTCGTCAGATTCAA-C 179
||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
Sbjct 349 AATTCGAGACCTTGTTACTAACTCGCTCTCTCTTTCCTCACCGATTCGTCAGATTCAAGC 408
Query 180 CTTCTTCTCCGGCGAA-CGCAGATGAGTCTTCCTCTTCTCCGTCAGATAAAACCCTAA 236
| | ||||||||| || | |||| | |||||||||||||||| | || ||||||||||
Sbjct 409 CCT-TTCTCCGGCAAAAC-CAGACGGGTCTTCCTCTTCTCCGCCGGACAAAACCCTAA 464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109989394095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5