BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948269
Length=566
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46720.1 | Symbols: | AIG2-like (avirulence induced gene) f... 848 0.0
> AT5G46720.1 | Symbols: | AIG2-like (avirulence induced gene)
family protein | chr5:18959169-18959749 FORWARD LENGTH=581
Length=581
Score = 848 bits (459), Expect = 0.0
Identities = 528/561 (94%), Gaps = 5/561 (1%)
Strand=Plus/Plus
Query 10 AACTCGCCGCCATGGGAGGATCACACAAGAACCTCATCTTCGTGTACGGAACGTTAAAAA 69
||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 4 AACTCATCGCCATGGGAGGATCAAACAAGAACCTCATATTCGTGTACGGAACGTTAAAAA 63
Query 70 GAAACCATCGAAACCATTTCCTTTTAGAAGATCTGATCTCAACAAACGACGCCGTTTACA 129
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 64 GAAACCATCGAAACCATTTCCTCCTAGAAGATCTGATCTCAACAAACGACGCCGTTTACA 123
Query 130 TCGGCCAACGCACGACCCGGTTACAGTACCCGCTCGTTACGGGTCTCTACGGGATTCCTT 189
| || |||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||
Sbjct 124 TAGGACAACGCACGACCCGGTTACAATACCCGCTCGTTACAGGTCTCTATGGGATCCCTT 183
Query 190 ACTTAATCAACAAATCCGGGTCGGGTCAAAAGATCCGAGGTGAGCTTTATTCGGTTTCAA 249
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 184 ACTTAATCAACAAATCCGGGTCGGGTCAAAAGATCCGAGGCGAGCTTTATTCGGTTTCAA 243
Query 250 AACGTGGGCTTGTACGTCTTGATGAATTGGAAGGGATCAAAGTGAATCACTACGAGAGAT 309
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 244 AACGTGGGCTTGTACGTCTTGATGAATTGGAAGGTATCAAAGTTAATCACTACGAGAGAT 303
Query 310 TACCAATTGAAGTTATTGATG-A-A-GATGAAGAAGAAGAACCAAACGGCGTCGTTTTGG 366
||||||| ||||||||||| | | | ||||||||||||||| ||||||| ||||| ||||
Sbjct 304 TACCAATAGAAGTTATTGAGGAAGATGATGAAGAAGAAGAATCAAACGGTGTCGTCTTGG 363
Query 367 CTGAGGCTTATTTTGCTCA-TTGTGGATTTGGTGAGAGATTGTGGGAGAAGAAAGGTAAA 425
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 364 CTGAGGCTTATTTTGCTCACTT-TGGATTTGGTGAGAGATTGTGGGAGAAGAAAGGTAAA 422
Query 426 TGTGGGATGTGTGAATTTGGTGAAAACGATGGCGTTTTGTATGTTAGGGTTAAAGATAGA 485
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 423 TGTGGGATGTGTGAATTTGGTGAAAACGATGGCGTTTTGTATGTTCGTCCTAAAGATAGG 482
Query 486 CCAAGGTTTAGCTCTGTTCTTGATGAAATTGAAGCTTTTGTGTCTTCTAGTAATGATTGA 545
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 483 CCAATGTTTAGCTCTGTTCTTGATGAAATTGAAACTTTTGTGTCTTCTAGTAATGATTGA 542
Query 546 TTACTAATTTGATTCAATGGG 566
|||||||||| ||||||||||
Sbjct 543 TTACTAATTTAATTCAATGGG 563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27176673527
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5