BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948270
Length=721
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46710.1 | Symbols: | PLATZ transcription factor family pro... 1011 0.0
> AT5G46710.1 | Symbols: | PLATZ transcription factor family protein
| chr5:18952616-18954692 REVERSE LENGTH=1112
Length=1112
Score = 1011 bits (547), Expect = 0.0
Identities = 667/725 (92%), Gaps = 7/725 (1%)
Strand=Plus/Plus
Query 1 GTCTTTTACTACATTTTGAAATGGCGATTGAAGATTACGAGAACCCAAATCGAGAAATCA 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 GTCTTTTACTGCATTTTGAAATGGCGATTGAAGATTACGAGAACCCAAATCGAGAAATCA 248
Query 61 AACCTAAGAACAGAAGATTCATGGAAGAAGAGAATCAATGGCCTCTATGGCTGAAACCTT 120
||||||||||||||||||||||||||| ||||||||| |||||| ||||||| |||||||
Sbjct 249 AACCTAAGAACAGAAGATTCATGGAAGGAGAGAATCAGTGGCCTATATGGCTCAAACCTT 308
Query 121 TACTAAACGAACACTTCTTTGTTCAATGCAAGTCTCATGGACACTCACCGAAAAGCGAAT 180
|||||||| ||||||| |||| ||||||||||| ||||||||||| ||| | || |||||
Sbjct 309 TACTAAACCAACACTTTTTTGCTCAATGCAAGTTTCATGGACACTTACCTAGAACCGAAT 368
Query 181 GCAATATGTATTGCTTAGACTGTACCAATGACTCGCTTTGTTCTCTATGTCTTAATGACC 240
|||| |||||||||||||||||||||||||||||| |||||||||| |||||| ||| |
Sbjct 369 GCAAAATGTATTGCTTAGACTGTACCAATGACTCGTTTTGTTCTCTCTGTCTTTCTGAAC 428
Query 241 ACAAGAACCATCGTACCATTCAGATAAGGATATCATCTTATCATAATGTGATAAGGGTCA 300
|| |||| ||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 429 ACGAGAATCATCGTACCATTCAGATAAGGATATCATCTTATCATAATGTGACAAAGGTCG 488
Query 301 ATGAGATACAGAAGTACTTAGACATATCAAGCATTCAGACATATGTGATCAATAGCGCAA 360
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 489 ATGAGATACAGAAATACTTAGACATATCAAGCATTCAGACATATGTGATCAATAGCTCAA 548
Query 361 AGGTTTTGTTCTTGAATGAGAGGCCTCAGTCTAGGCCTGGTAAAGGGTTTACTAATACCT 420
||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||
Sbjct 549 AGGTTTTGTTCTTGAATGAGAGGCCTCAGTCTAAGCCTGGTAAAGGTTTTACTAATGCCT 608
Query 421 GCAAGGTCTGTTATCGTGGCCTTGCCGAAAATTGCTTCCGCTTCTGCTCTATTGGCTGCA 480
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 609 GCATGGTCTGTTATCGTGGCCTTGCCGAAAACTGCTTCCGCTTCTGCTCTATTGGCTGCA 668
Query 481 AGGTTGCAGGAACATCTGGAAG-CTTTGC-GAAGAGAGTGAAGCATACGACGATTGAATC 538
|||||||||||||||||||| | ||| | |||||||||||||||||| |||| ||| ||
Sbjct 669 AGGTTGCAGGAACATCTGGA-GTCTTC-CAGAAGAGAGTGAAGCATACAACGAATGACTC 726
Query 539 AGACAATTCAAGCAACAGTTCTGGAGTAGAGAATAACAGTTCAGGAGCAGAGAATGACAA 598
||| ||||||| ||||||||||||||| |||||||||||||| ||||||||||||| ||
Sbjct 727 AGATAATTCAAACAACAGTTCTGGAGTGGAGAATAACAGTTCTGGAGCAGAGAATGGTAA 786
Query 599 TTCAAATCTGCAGAGTCTCAGCCCACCAACACCTCAATTTCCTCCTGGTTCTCTGCGAAA 658
||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||
Sbjct 787 TTCAAATCTGCAGAGTCTCAGTCCACCTACACCTCAATTTCCTCCTCGTTCTCTGCGAAA 846
Query 659 GCGACGTA-GAAAGGGAATTCCTCACCAAGCTCCACTGGGTTGAGATTGA-ATCAAGAAG 716
||||| || | |||||||||||||||| ||||||| | |||||||||| ||||||||
Sbjct 847 GCGAC-TAAGGAAGGGAATTCCTCACCGAGCTCCATTTAGTTGAGATTGTGATCAAGAAA 905
Query 717 AAGAA 721
|||||
Sbjct 906 AAGAA 910
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34962966312
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5