BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948274
Length=914
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46650.1 | Symbols: | RING/U-box superfamily protein | chr5... 1360 0.0
> AT5G46650.1 | Symbols: | RING/U-box superfamily protein | chr5:18930443-18931312
FORWARD LENGTH=870
Length=870
Score = 1360 bits (736), Expect = 0.0
Identities = 831/876 (95%), Gaps = 9/876 (1%)
Strand=Plus/Plus
Query 22 ATGCCGATAGCGAAACCGATCAACCAAAACACTACTGTTCCATATCCACCACAACATTAC 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCCGATAGCGAAACCGATCAACCAAAACACTACTGTTCCATATCCACCACAACATTAC 60
Query 82 AGTAAACCGCCTCTAGTCATAATCCTAACCGTGATCCTCCTCGTCGT-TTTCTTCATCGG 140
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 61 AGTAAACCGCCTCTAGTCATAATCCTAACCGTGATCCTCCTCGTCGTCTTT-TTCATCGG 119
Query 141 TTTCTTT-GCTCTATATTTCTGCAAATACTTCTACCACACTCTCACCGAAGCTTGGAATC 199
||| ||| ||| | |||||||| |||| ||||||||||||||||||||||||||||| |
Sbjct 120 TTT-TTTCGCTATCTATTTCTGTAAATGTTTCTACCACACTCTCACCGAAGCTTGGAACC 178
Query 200 ACCATTACCGCAACGGATTACCCGAAAATCAAGTCCAAGCACAACAAGATCCCGTTCAAC 259
||||||||| ||||||||| |||||||||||| |||||||||||||||| ||||||||||
Sbjct 179 ACCATTACCACAACGGATTGCCCGAAAATCAAATCCAAGCACAACAAGAACCCGTTCAAC 238
Query 260 CACCGGTTAACCCTGGTCTCGAGCCACATATCATCCAATCATTCCCTTTGTTTCCATTCT 319
||||||||||||||||||| |||||||| ||||||||||| | |||||||||||||||||
Sbjct 239 CACCGGTTAACCCTGGTCTAGAGCCACACATCATCCAATCCTACCCTTTGTTTCCATTCT 298
Query 320 CATCCGTCAAAGACCTCAGGGAAGACAAATACGGTCTCGAATGCGCCATTTGTCTTCTTG 379
||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 299 CATCCGTCAAAGATCTCAGGGAAGACAAATACGGTCTCGAATGCGCGATTTGTCTACTTG 358
Query 380 AATTCGAAGAAGAACACATCTTCCTACGACTCTTGACAACTTGTTACCATGTTTTCCATC 439
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 359 AATTCGAAGAAGAACACATCCTCCTACGACTCTTGACAACTTGTTACCATGTTTTTCATC 418
Query 440 AAGAATGCATCGATCAATGGCTTGAGTCTAACAAAACATGCCCTGTATGTCGTCGGAATC 499
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 419 AAGAATGCATCGATCAATGGCTTGAATCTAACAAAACATGCCCTGTATGTCGTCGGAATT 478
Query 500 TAGATCCAAACGCGCCTGAAAACATCAAAGAGTTGATCATCGAAGTCATACAAGAAAACG 559
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TAGATCCAAACGCGCCAGAAAACATCAAAGAGTTGATCATCGAAGTCATACAAGAAAACG 538
Query 560 CACACGAAAATCGCGATCAA-AATCAAACGTCAACATCAAACGAGGTTTTGTTGTCGAGA 618
|||| |||||||||||||| || |||||||||||||||||||||||| |||||||||||
Sbjct 539 CACATGAAAATCGCGATCAGGAA-CAAACGTCAACATCAAACGAGGTTATGTTGTCGAGA 597
Query 619 CAAAGTAGTAGTAACAACGAGAGAAAGATTGAGACGTTACCGGATAAGTTCTCGAGATCA 678
||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 598 CAAAGTAGTGGTAACAACGAGAGAAAGATTGAGACGTTACCGGATAAATTCTCGAGATCG 657
Query 679 AAAACGACGGGACATTCAATTGTGAGGAATAAACCGGAGGAAGAAGATAGGTATACTTTG 738
|||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 658 AAAACGACAGGTCATTCAATTGTGAGGAATAAACCGGAGGAAGAAGATCGGTATACTTTG 717
Query 739 AGGTTACCGGATCATGTTAAGATTAAGGTTACGAGAAGACATAACAATAATCAAACAGAG 798
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 718 AGGTTACCGGATCATGTTAAGATTAAGGTTACGAGAAGACACAACAATAATCAAACAGAG 777
Query 799 AGTTGTATTTCATTTGGTGAGCTTATGAGAAACAGAGGAGGCCGGTTTGGTGAAGTTTCT 858
|||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||
Sbjct 778 AGTTGTATTTCATTTGGTGAGCTTGTTAGAAACAGAGAAGGCCGGTTTGGTGAAGTTTCT 837
Query 859 GGTCAATCTCTTGTACCGGAATCATCAGGAAGTTAA 894
|||||||| ||||||||||||||| |||||||||
Sbjct 838 GGTCAATCACTTGTACCGGAATCA---GGAAGTTAA 870
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44658156683
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5