BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948276
Length=1475
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46630.2 | Symbols: | Clathrin adaptor complexes medium sub... 2337 0.0
> AT5G46630.2 | Symbols: | Clathrin adaptor complexes medium subunit
family protein | chr5:18920438-18923445 FORWARD LENGTH=1853
Length=1853
Score = 2337 bits (1265), Expect = 0.0
Identities = 1341/1378 (97%), Gaps = 4/1378 (0%)
Strand=Plus/Plus
Query 1 TTTCAATTGTTCAACTTCTTCGTCGTCGTCTTCTTCCTTTGCTCCGTCGTTGAGATCTCG 60
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 7 TTTCAGTTGTTCAACTTCTTCGTCGTCGTCTTCTTCCTTTGCTCCGTCGTCGAGATCTCG 66
Query 61 TCGAACCTCAAATCTCAAATCTCCTG-ACACCAGATCGTCTAATTATCCGATCTGCGTTT 119
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 67 TCGAACCTCAAATCTCAAATCTCCTGTA-ACCAGATCGTCTAATTATCCGATCTGCGTTT 125
Query 120 CGAATTTCTCAGATCGAAGATGCCGGTGGCTGCTTCCGCCATCTACTTTCTGAATCTCCG 179
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 126 CGAA--TCTCAGATCGAAGATGCCGGTGGCTGCTTCCGCCATCTATTTTCTGAATCTCCG 183
Query 180 TGGCGATGTACTCATAAATCGCACCTACCGTGATGACGTCGGGGGAAACATGGTGGATGC 239
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 184 TGGCGATGTACTCATAAATCGCACCTACCGAGATGACGTCGGGGGAAACATGGTGGATGC 243
Query 240 ATTTCGTACGCATATAATGCAGACGAAAGAGTTAGGGAATTGTCCTGTGCGTCAGATTGG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 ATTTCGTACGCATATAATGCAGACGAAAGAGTTAGGGAATTGTCCTGTGCGTCAGATTGG 303
Query 300 TGGCTGCTCCTTTGTTTATATGCGAATCAGCAATGTCTACATTGTCATTGTTGTCAGTAG 359
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 304 TGGCTGCTCCTTTGTTTATATGCGAATCAGCAATGTCTACATCGTCATTGTTGTCAGTAG 363
Query 360 CAATGCTAATGTTGCTTGTGGATTCAAATTCGTTGTTGAGGCTGTTGCTTTGTTCAAATC 419
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 364 CAATGCTAATGTTGCTTGTGGATTCAAATTTGTTGTTGAGGCTGTAGCTTTGTTCAAATC 423
Query 420 ATACTTTGGTGGAGCTTTTGATGAAGATGCTATTAGAAATAACTTTGTTCTGATTTATGA 479
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 424 ATACTTTGGTGGAGCTTTTGATGAAGACGCTATTAGAAATAACTTTGTTCTGATTTATGA 483
Query 480 ATTGTTGGACGAGATTATGGACTTTGGCTATCCACAAAATCTCTCCCCTGAAATTTTGAA 539
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 484 ATTGTTGGATGAGATTATGGACTTTGGCTATCCACAAAATCTCTCACCTGAAATTTTAAA 543
Query 540 ACTTTATATCACTCAGGAAGGTGTACGGTCACCATTTTCATCGAAGCCAAAGGACAAGCC 599
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 544 ACTTTATATCACTCAGGAAGGTGTACGGTCACCATTTTCATCGAAGCCAAAAGACAAACC 603
Query 600 TGTTCCAAATGCAACATTACAAGTTACGGGTGCTGTTGGTTGGAGAAGAGAGGGCCTTGC 659
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 604 TGTTCCAAATGCAACATTACAAGTTACAGGTGCTGTTGGTTGGAGAAGAGAGGGCCTTGC 663
Query 660 TTATAAAAAGAATGAGGTGTTTCTGGATATTGTGGAAAGTGTAAACCTTCTGATGTCCTC 719
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 TTACAAAAAGAATGAGGTGTTTCTGGATATTGTGGAAAGTGTAAACCTTCTGATGTCCTC 723
Query 720 TAAAGGCAACGTTCTTCGGTGTGATGTGACGGGGAAAGTTTTAATGAAATGTTTCCTTTC 779
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 724 TAAAGGCAATGTTCTTCGGTGTGATGTGACGGGGAAGGTTTTAATGAAATGTTTCCTTTC 783
Query 780 GGGAATGCCTGATTTGAAGTTGGGGTTGAATGATAAAATTGGTCTTGAGAAGGAATCAGA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 GGGAATGCCTGATTTGAAGTTGGGGTTGAATGATAAAATTGGTCTTGAGAAGGAATCAGA 843
Query 840 AATGAAATCTCGCCCAGCTAAGAGTGGTAAAACCATTGAGCTTGATGATGTCACATTTCA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 AATGAAATCTCGCCCAGCTAAGAGTGGTAAAACCATTGAGCTTGATGATGTCACATTTCA 903
Query 900 CCAGTGTGTGAACCTGACAAGATTCAATTCCGAGAAGACCGTTAGTTTTGTACCACCGGA 959
|||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 904 CCAGTGTGTGAACCTGACCAGATTCAACTCCGAGAAGACTGTTAGTTTTGTACCACCGGA 963
Query 960 TGGAGAGTTTGAACTGATGAAGTATCGAATAACAGAGGGTGTAAATCTGCCTTTCCGCGT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 964 TGGAGAGTTTGAACTGATGAAGTATCGAATAACAGAGGGTGTAAATCTGCCTTTCCGTGT 1023
Query 1020 ATTACCAACAATCAAAGAACTTGGTCGTACACGCATGGAAGTAAATGTCAAGGTCAAAAG 1079
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1024 ATTACCAACAATCAAAGAACTTGGTCGTACACGTATGGAAGTAAATGTCAAGGTCAAAAG 1083
Query 1080 TGTGTTTGGTGCTAAAATGTTTGCCCTTGGGGTCGTAGTTAAAATTCCAGTGCCAAAACA 1139
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1084 TGTGTTTGGTGCTAAAATGTTTGCCCTTGGGGTCGTGGTTAAAATTCCAGTGCCAAAACA 1143
Query 1140 AACAGCCAAGACCAATTTCCAAGTGACTACTGGTCGCGCTAAATACAATCCATCAATCGA 1199
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1144 AACAGCCAAGACCAATTTCCAAGTGACAACTGGTCGCGCTAAATACAATCCATCAATCGA 1203
Query 1200 TTGCTTGGTTTGGAAGATAAGAAAATTCCCAGGACAAACAGAGTCGACACTAAGTGCAGA 1259
||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 1204 TTGCTTGGTTTGGAAGATAAGAAAATTCCCAGGGCAAACAGAGTCCACGCTAAGTGCAGA 1263
Query 1260 AATTGAGTTGATCTCAACAATGGGAGAGAAGAAATCTTGGACAAGACCACCAATCCAAAT 1319
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1264 AATTGAGTTGATCTCAACAATGGGAGAGAAGAAATCTTGGACAAGGCCACCGATCCAAAT 1323
Query 1320 GGAATTTCAGGTCCCAATGTTTACAGCATCTGGTTTGCGAGTTCGCTTTCTCAAGGTA 1377
|||||||||||| |||||||| |||||||||||| |||||||||| ||||||||||||
Sbjct 1324 GGAATTTCAGGTGCCAATGTTCACAGCATCTGGTCTGCGAGTTCGTTTTCTCAAGGTA 1381
Score = 169 bits (91), Expect = 9e-41
Identities = 99/103 (96%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 1373 AGGTATGGGAGAAGAGTGGCTACAACACGGTCGAGTGGGTTCGATACATAACGAAAGCGG 1432
|||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1578 AGGTTTGGGAGAAGAGCGGTTACAACACGGTCGAGTGGGTTCGATACATAACGAAAGCGG 1637
Query 1433 GATCTTACGAGATCAGATGCTGAACATAAAACACAGTTCAGGT 1475
||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1638 GATCTTACGAGATCAGATGCTGAACATTAAACACAGTTCAGGT 1680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72740589705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5