BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948288

Length=257
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G12320.1 | Symbols:  | ankyrin repeat family protein | chr5:...   172    1e-42


> AT5G12320.1 | Symbols:  | ankyrin repeat family protein | chr5:3982684-3984078 
FORWARD LENGTH=692
Length=692

 Score =  172 bits (93),  Expect = 1e-42
 Identities = 117/128 (91%), Gaps = 3/128 (2%)
 Strand=Plus/Plus

Query  1    TCTCAGAACATTGGCCTCTTATGGTGGCTCTCTTGACTCTCGTGATTCACAAGGCCGAAC  60
            ||||||||| ||||||||| |||||  ||||||| |||||||||||||||||||||||||
Sbjct  156  TCTCAGAACCTTGGCCTCTGATGGTCTCTCTCTTCACTCTCGTGATTCACAAGGCCGAAC  215

Query  61   A--ACTGCATATGGCTGCGGCGAATGGACATATGACTATAGTGGAGTATCTTATCAGTGA  118
            |   ||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct  216  AGCCCTGCATATGGCCGCAGCGAATGGACATATGACTATAGTGGAGTATCTTATCAGTGA  275

Query  119  AGG-GTGG  125
            ||| ||||
Sbjct  276  AGGAGTGG  283



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11712385517


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5