BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948309
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46370.1 | Symbols: KCO2, ATTPK2, ATKCO2 | Ca2+ activated ou... 296 3e-79
AT5G46360.1 | Symbols: KCO3, ATKCO3 | Ca2+ activated outward re... 231 7e-60
AT4G18160.1 | Symbols: KCO6, ATTPK3, ATKCO6, TPK3 | Ca2+ activa... 139 4e-32
> AT5G46370.1 | Symbols: KCO2, ATTPK2, ATKCO2 | Ca2+ activated
outward rectifying K+ channel 2 | chr5:18809576-18811772 REVERSE
LENGTH=1431
Length=1431
Score = 296 bits (160), Expect = 3e-79
Identities = 273/325 (84%), Gaps = 17/325 (5%)
Strand=Plus/Plus
Query 233 TCATCCTCCAATTCCACAGACCTCCTTATCCCACCAACGGGA-CCTAATAAACTAACCCG 291
|||| |||| ||||||||||||||||| |||||| || ||| |||||||||| ||
Sbjct 308 TCATTCTCCGATTCCACAGACCTCCTTCTCCCACTTAC-GGAGCCTAATAAACCGGTTCG 366
Query 292 GAAACCTAAATCTTCCCA-CAATCTCCACCGGTCTAAAACAGCTCCTGCTATGGCTGCAA 350
|||| ||||| | ||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 367 GAAATCTAAA-CCGACCATCAATTTCCACCGGTCTAAAACAGCTCCTGCTATGGCTGCAA 425
Query 351 TCAACGATGTATCTCA-CCCAAATGATCAGAGAACAGA---GCAATCAAATTCGAAATCC 406
||||| || ||||||| ||||| ||||| | |||||| |||||| |||||||| |
Sbjct 426 TCAACAATATATCTCATCCCAA-TGATCCCAAAACAGATCAGCAATCTGATTCGAAAACT 484
Query 407 ATTGTAAGAC-AAGCTCTTGCTTTG-TTCGTTGTGTATCTCTC-TGTAGGTGTGCTTATC 463
||||||| || ||||| ||||||| || ||||||||||| || | ||||||||||||||
Sbjct 485 ATTGTAA-ACCAAGCTGTTGCTTTACTT-GTTGTGTATCTATCCT-TAGGTGTGCTTATC 541
Query 464 TATTGGCTGAATCGAGATAACGACAATGTGAATCAGACTCATCTTGTTGTTGTTGCTCTG 523
|||||| |||||||||||| | |||||||||| |||||||||| |||||||| |||| ||
Sbjct 542 TATTGGTTGAATCGAGATAGCTACAATGTGAAGCAGACTCATCCTGTTGTTGATGCTTTG 601
Query 524 TACTTTTGTATTGT-AGCAATGTGT 547
|||||||||||||| | | ||||||
Sbjct 602 TACTTTTGTATTGTTA-CGATGTGT 625
Score = 165 bits (89), Expect = 7e-40
Identities = 98/102 (96%), Gaps = 1/102 (1%)
Strand=Plus/Plus
Query 45 ACCCTAGTTT-AAAAATCTCTCAACTTTCCAGTTTCCCGGCGAAAACCCAGATGGCTCAC 103
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2 ACCCTAGTTTCAAAAATCTCTCAACTTTCCAGTTTCCCGGCGAAAACCCAGATGGCTAAC 61
Query 104 GACGGTAACGGCGATAACAACAATGACCCATTACACCAATAC 145
||||||||||||||||||||| |||||||||||| |||||||
Sbjct 62 GACGGTAACGGCGATAACAACGATGACCCATTACGCCAATAC 103
> AT5G46360.1 | Symbols: KCO3, ATKCO3 | Ca2+ activated outward
rectifying K+ channel 3 | chr5:18806821-18808224 REVERSE LENGTH=910
Length=910
Score = 231 bits (125), Expect = 7e-60
Identities = 204/240 (85%), Gaps = 13/240 (5%)
Strand=Plus/Plus
Query 676 TTTGGCTAAAGCAAGAGTTGATAAGAGGAATAGAGAGCGGGCCAAGAAAGTGCTTGGTGA 735
||||||| | ||||||| ||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 606 TTTGGCTGACGCAAGAGCTGATAAGAGAAATAGAGAGCGGGCCAAGAAAGTGCTTGGCGA 665
Query 736 AAACATGACC-ATCTCTGAGTTCTTTGCTGCAGATATTGACAACAATGGTTGCTTGAG-- 792
| ||| | | || ||| ||||||||||||| |||||||||||| ||||| |||||||
Sbjct 666 GAGCAT-ATCTATATCTCAGTTCTTTGCTGCGGATATTGACAACGATGGTCGCTTGAGTT 724
Query 793 -AGTATA-----CAATATACAAACTAGAGCAGATGGAGAAAATAACTCAA-AGGA-TACT 844
|| | | |||||||||||||| ||||||||||||||||||| ||| |||| | |
Sbjct 725 TAGCAGAGTTTGCAATATACAAACTAAAGCAGATGGAGAAAATAACCCAAGAGGACTT-T 783
Query 845 ATACAAATCTGTAACCAGTTTAACAAGCTTGACCAAACCGATAGTGGAACGATCACTCTT 904
||||||||||||||||||||| |||||||||||| |||| | ||||||| ||||||||||
Sbjct 784 ATACAAATCTGTAACCAGTTTGACAAGCTTGACCGAACCCAAAGTGGAAGGATCACTCTT 843
Score = 172 bits (93), Expect = 4e-42
Identities = 130/146 (89%), Gaps = 9/146 (6%)
Strand=Plus/Plus
Query 119 AACAACAATGACCCATTACACCAATACCTGTTACCATTACCGGAGAACAACGACGTCA-- 176
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 25 AACAACAAGGACCCATTACACCAATACCTGTTACCATTACCGGAGAACAACGACGTCACG 84
Query 177 -T------GCCAATGACTCCATCAGAATTCAAAAACCGATTACTCTTCGGCCCATTCCCT 229
| ||||||||||||||| ||||||||||||||||||||||||||| |||| |||
Sbjct 85 ATTTCTATGCCAATGACTCCATCGGAATTCAAAAACCGATTACTCTTCGGCTCATTACCT 144
Query 230 CCGTCATCCTCCAATTCCACAGACCT 255
| |||||||||| || ||||||||||
Sbjct 145 CGGTCATCCTCCGATCCCACAGACCT 170
> AT4G18160.1 | Symbols: KCO6, ATTPK3, ATKCO6, TPK3 | Ca2+ activated
outward rectifying K+ channel 6 | chr4:10055696-10057736
FORWARD LENGTH=1501
Length=1501
Score = 139 bits (75), Expect = 4e-32
Identities = 191/244 (78%), Gaps = 20/244 (8%)
Strand=Plus/Plus
Query 313 TCTCCACCGGTCTAAAACAGCTCCTGCTATGGCTGCAATCAACGATGTATC-TCACCCAA 371
||| ||||| || |||||||| || || ||||||| |||||| ||| | || ||||||||
Sbjct 351 TCTTCACCGATCCAAAACAGCACCAGCAATGGCTGTAATCAATGATCT-TCATCACCCAA 409
Query 372 AT-GATCAGAGAACAGA-GCAATCA-A-A-TTCGA-AATCCATTGTAAGACAAGCTCTTG 425
| | ||| | || ||| | | || | | || | ||| | |||||||||||| |||
Sbjct 410 TTCG-TCA-A-AA-AGATCCTA-CAGAGACGTC-ACGATCTGTAGTAAGACAAGCTTTTG 463
Query 426 CT-TTGTTCGTTGTGTATCTCTCTGTAGGTGTGCTTATCTATTGGCTGAATCGAGATAAC 484
|| || ||||||||||||||||| |||||||||||||||||||||||||||| ||| ||
Sbjct 464 CTCTT-CTCGTTGTGTATCTCTCTCTAGGTGTGCTTATCTATTGGCTGAATCGTGATCAC 522
Query 485 GACAATGTGAATCAGACTCATCTTGTTGTTGTTGC-TCTGTACTTTTGTATTGT-AGCAA 542
|| ||||||||| || |||| ||| |||| || | |||| |||||||| || | |||
Sbjct 523 TACGTTGTGAATCAAACCCATCCTGTAGTTGATGGAT-TGTATTTTTGTATCGTTA-CAA 580
Query 543 TGTG 546
||||
Sbjct 581 TGTG 584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47873142091
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5