BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg948309 Length=978 Score E Sequences producing significant alignments: (Bits) Value AT5G46370.1 | Symbols: KCO2, ATTPK2, ATKCO2 | Ca2+ activated ou... 296 3e-79 AT5G46360.1 | Symbols: KCO3, ATKCO3 | Ca2+ activated outward re... 231 7e-60 AT4G18160.1 | Symbols: KCO6, ATTPK3, ATKCO6, TPK3 | Ca2+ activa... 139 4e-32 > AT5G46370.1 | Symbols: KCO2, ATTPK2, ATKCO2 | Ca2+ activated outward rectifying K+ channel 2 | chr5:18809576-18811772 REVERSE LENGTH=1431 Length=1431 Score = 296 bits (160), Expect = 3e-79 Identities = 273/325 (84%), Gaps = 17/325 (5%) Strand=Plus/Plus Query 233 TCATCCTCCAATTCCACAGACCTCCTTATCCCACCAACGGGA-CCTAATAAACTAACCCG 291 |||| |||| ||||||||||||||||| |||||| || ||| |||||||||| || Sbjct 308 TCATTCTCCGATTCCACAGACCTCCTTCTCCCACTTAC-GGAGCCTAATAAACCGGTTCG 366 Query 292 GAAACCTAAATCTTCCCA-CAATCTCCACCGGTCTAAAACAGCTCCTGCTATGGCTGCAA 350 |||| ||||| | ||| |||| |||||||||||||||||||||||||||||||||||| Sbjct 367 GAAATCTAAA-CCGACCATCAATTTCCACCGGTCTAAAACAGCTCCTGCTATGGCTGCAA 425 Query 351 TCAACGATGTATCTCA-CCCAAATGATCAGAGAACAGA---GCAATCAAATTCGAAATCC 406 ||||| || ||||||| ||||| ||||| | |||||| |||||| |||||||| | Sbjct 426 TCAACAATATATCTCATCCCAA-TGATCCCAAAACAGATCAGCAATCTGATTCGAAAACT 484 Query 407 ATTGTAAGAC-AAGCTCTTGCTTTG-TTCGTTGTGTATCTCTC-TGTAGGTGTGCTTATC 463 ||||||| || ||||| ||||||| || ||||||||||| || | |||||||||||||| Sbjct 485 ATTGTAA-ACCAAGCTGTTGCTTTACTT-GTTGTGTATCTATCCT-TAGGTGTGCTTATC 541 Query 464 TATTGGCTGAATCGAGATAACGACAATGTGAATCAGACTCATCTTGTTGTTGTTGCTCTG 523 |||||| |||||||||||| | |||||||||| |||||||||| |||||||| |||| || Sbjct 542 TATTGGTTGAATCGAGATAGCTACAATGTGAAGCAGACTCATCCTGTTGTTGATGCTTTG 601 Query 524 TACTTTTGTATTGT-AGCAATGTGT 547 |||||||||||||| | | |||||| Sbjct 602 TACTTTTGTATTGTTA-CGATGTGT 625 Score = 165 bits (89), Expect = 7e-40 Identities = 98/102 (96%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 45 ACCCTAGTTT-AAAAATCTCTCAACTTTCCAGTTTCCCGGCGAAAACCCAGATGGCTCAC 103 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 2 ACCCTAGTTTCAAAAATCTCTCAACTTTCCAGTTTCCCGGCGAAAACCCAGATGGCTAAC 61 Query 104 GACGGTAACGGCGATAACAACAATGACCCATTACACCAATAC 145 ||||||||||||||||||||| |||||||||||| ||||||| Sbjct 62 GACGGTAACGGCGATAACAACGATGACCCATTACGCCAATAC 103 > AT5G46360.1 | Symbols: KCO3, ATKCO3 | Ca2+ activated outward rectifying K+ channel 3 | chr5:18806821-18808224 REVERSE LENGTH=910 Length=910 Score = 231 bits (125), Expect = 7e-60 Identities = 204/240 (85%), Gaps = 13/240 (5%) Strand=Plus/Plus Query 676 TTTGGCTAAAGCAAGAGTTGATAAGAGGAATAGAGAGCGGGCCAAGAAAGTGCTTGGTGA 735 ||||||| | ||||||| ||||||||| ||||||||||||||||||||||||||||| || Sbjct 606 TTTGGCTGACGCAAGAGCTGATAAGAGAAATAGAGAGCGGGCCAAGAAAGTGCTTGGCGA 665 Query 736 AAACATGACC-ATCTCTGAGTTCTTTGCTGCAGATATTGACAACAATGGTTGCTTGAG-- 792 | ||| | | || ||| ||||||||||||| |||||||||||| ||||| ||||||| Sbjct 666 GAGCAT-ATCTATATCTCAGTTCTTTGCTGCGGATATTGACAACGATGGTCGCTTGAGTT 724 Query 793 -AGTATA-----CAATATACAAACTAGAGCAGATGGAGAAAATAACTCAA-AGGA-TACT 844 || | | |||||||||||||| ||||||||||||||||||| ||| |||| | | Sbjct 725 TAGCAGAGTTTGCAATATACAAACTAAAGCAGATGGAGAAAATAACCCAAGAGGACTT-T 783 Query 845 ATACAAATCTGTAACCAGTTTAACAAGCTTGACCAAACCGATAGTGGAACGATCACTCTT 904 ||||||||||||||||||||| |||||||||||| |||| | ||||||| |||||||||| Sbjct 784 ATACAAATCTGTAACCAGTTTGACAAGCTTGACCGAACCCAAAGTGGAAGGATCACTCTT 843 Score = 172 bits (93), Expect = 4e-42 Identities = 130/146 (89%), Gaps = 9/146 (6%) Strand=Plus/Plus Query 119 AACAACAATGACCCATTACACCAATACCTGTTACCATTACCGGAGAACAACGACGTCA-- 176 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 25 AACAACAAGGACCCATTACACCAATACCTGTTACCATTACCGGAGAACAACGACGTCACG 84 Query 177 -T------GCCAATGACTCCATCAGAATTCAAAAACCGATTACTCTTCGGCCCATTCCCT 229 | ||||||||||||||| ||||||||||||||||||||||||||| |||| ||| Sbjct 85 ATTTCTATGCCAATGACTCCATCGGAATTCAAAAACCGATTACTCTTCGGCTCATTACCT 144 Query 230 CCGTCATCCTCCAATTCCACAGACCT 255 | |||||||||| || |||||||||| Sbjct 145 CGGTCATCCTCCGATCCCACAGACCT 170 > AT4G18160.1 | Symbols: KCO6, ATTPK3, ATKCO6, TPK3 | Ca2+ activated outward rectifying K+ channel 6 | chr4:10055696-10057736 FORWARD LENGTH=1501 Length=1501 Score = 139 bits (75), Expect = 4e-32 Identities = 191/244 (78%), Gaps = 20/244 (8%) Strand=Plus/Plus Query 313 TCTCCACCGGTCTAAAACAGCTCCTGCTATGGCTGCAATCAACGATGTATC-TCACCCAA 371 ||| ||||| || |||||||| || || ||||||| |||||| ||| | || |||||||| Sbjct 351 TCTTCACCGATCCAAAACAGCACCAGCAATGGCTGTAATCAATGATCT-TCATCACCCAA 409 Query 372 AT-GATCAGAGAACAGA-GCAATCA-A-A-TTCGA-AATCCATTGTAAGACAAGCTCTTG 425 | | ||| | || ||| | | || | | || | ||| | |||||||||||| ||| Sbjct 410 TTCG-TCA-A-AA-AGATCCTA-CAGAGACGTC-ACGATCTGTAGTAAGACAAGCTTTTG 463 Query 426 CT-TTGTTCGTTGTGTATCTCTCTGTAGGTGTGCTTATCTATTGGCTGAATCGAGATAAC 484 || || ||||||||||||||||| |||||||||||||||||||||||||||| ||| || Sbjct 464 CTCTT-CTCGTTGTGTATCTCTCTCTAGGTGTGCTTATCTATTGGCTGAATCGTGATCAC 522 Query 485 GACAATGTGAATCAGACTCATCTTGTTGTTGTTGC-TCTGTACTTTTGTATTGT-AGCAA 542 || ||||||||| || |||| ||| |||| || | |||| |||||||| || | ||| Sbjct 523 TACGTTGTGAATCAAACCCATCCTGTAGTTGATGGAT-TGTATTTTTGTATCGTTA-CAA 580 Query 543 TGTG 546 |||| Sbjct 581 TGTG 584 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47873142091 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5