BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948313
Length=249
Score E
Sequences producing significant alignments: (Bits) Value
AT1G43720.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 150 5e-36
AT3G30520.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 126 8e-29
AT3G42870.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 126 8e-29
> AT1G43720.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G42870.1);
Has 51 Blast hits to 51 proteins in 3 species: Archae - 0;
Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 49; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:16495080-16496078
FORWARD LENGTH=945
Length=945
Score = 150 bits (81), Expect = 5e-36
Identities = 117/135 (87%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 112 TCAAGATGATTATGATGAATTTAAAAAGGCGGAAGCGATATTCATTGCGCTAAACCTTTC 171
|||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||| |
Sbjct 390 TCAAGATGATTACGATGAATTTAAAAAGGCGGAAGCGATATTTATCGCGCTAAATCTTCC 449
Query 172 TAAACATACTAGATTTTATTGGACATGCATCAGTACACTCAAAGAGCAAGTACTTTAGCG 231
||| || ||||||||| ||||| ||||||| | | |||| || |||| |||| ||| |||
Sbjct 450 TAAGCACACTAGATTTCATTGGGCATGCATTAATGCACTTAAGGAGCTAGTATTTTGGCG 509
Query 232 TAAGTATTTCATTGA 246
||||||||| |||||
Sbjct 510 TAAGTATTTGATTGA 524
> AT3G30520.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G42870.1);
Has 70 Blast hits to 70 proteins in 9 species: Archae - 0;
Bacteria - 8; Metazoa - 5; Fungi - 0; Plants - 57; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:12130340-12132173
FORWARD LENGTH=1194
Length=1194
Score = 126 bits (68), Expect = 8e-29
Identities = 112/134 (84%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 113 CAAGATGATTATGATGAATTTAAAAAGGCGGAAGCGATATTCATTGCGCTAAACCTTTCT 172
||||||||||| ||||||||||||||||||||||||||||| | || ||| | ||| |
Sbjct 721 CAAGATGATTACGATGAATTTAAAAAGGCGGAAGCGATATTTACCGCCCTAGATCTTCCC 780
Query 173 AAACATACTAGATTTTATTGGACATGCATCAGTACACTCAAAGAGCAAGTACTTTAGCGT 232
|| || ||||||||| ||||| ||||||| | | |||| || |||| |||| ||| || |
Sbjct 781 AAGCACACTAGATTTCATTGGGCATGCATTAATGCACTTAAGGAGCTAGTATTTTGGCCT 840
Query 233 AAGTATTTCATTGA 246
||||||||||||||
Sbjct 841 AAGTATTTCATTGA 854
> AT3G42870.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G30520.1);
Has 47 Blast hits to 47 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:14949456-14951279
FORWARD LENGTH=939
Length=939
Score = 126 bits (68), Expect = 8e-29
Identities = 113/135 (84%), Gaps = 2/135 (1%)
Strand=Plus/Plus
Query 113 CAAGATGATTATGATGAATTTAAAAAGGCGGAAGCGATATTCATTGCGCTAAACCTTTCT 172
||||||||||| ||||||||||||||||||||||||||||| || | ||| | ||| |
Sbjct 397 CAAGATGATTACGATGAATTTAAAAAGGCGGAAGCGATATTTATCCCACTAGATCTTCCC 456
Query 173 AAACATACTAGATTTTATTGGACATGCATCAGTACACTCAAAGAGCAAGTACT-TTAGCG 231
|| || ||||||||||||||| ||||||| | | |||| | |||| |||| | || |||
Sbjct 457 AAGCACACTAGATTTTATTGGGCATGCATTAATGCACTTGAGGAGCTAGTA-TATTGGCG 515
Query 232 TAAGTATTTCATTGA 246
|||||||||||||||
Sbjct 516 TAAGTATTTCATTGA 530
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11310243525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5