BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948334
Length=1077
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46150.2 | Symbols: | LEM3 (ligand-effect modulator 3) fami... 1781 0.0
> AT5G46150.2 | Symbols: | LEM3 (ligand-effect modulator 3) family
protein / CDC50 family protein | chr5:18707646-18710593
REVERSE LENGTH=1689
Length=1689
Score = 1781 bits (964), Expect = 0.0
Identities = 1030/1063 (97%), Gaps = 0/1063 (0%)
Strand=Plus/Plus
Query 15 GAGAGGGGACAATGATGGAAGTGGAAGGATCGATGAATCGTGCTCCTGATCAATCATCCT 74
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 159 GAGAGGGGATAATGATGGAAGTGGAAGGATCGATGAATCGTGCTCCTGATCAATCATCCT 218
Query 75 TCTTACGATCGAGACGATCCAAAGCTCTGTATCAGTTTAAGCAGCAGAAACTCCCAGCTT 134
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 TCTTACGATCAAGACGATCCAAAGCTCTGTATCAGTTTAAGCAGCAGAAACTCCCAGCTT 278
Query 135 GTAAGCCAGTCTTAACACCAATATCGGTTATAACAGTGTTTATGTTAATGGGTTTTGTTT 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 GTAAGCCAGTCTTAACACCAATATCGGTTATAACAGTGTTTATGTTAATGGGTTTTGTTT 338
Query 195 TCATTCCCATTGGTCTCATTACTCTTCGTGCTTCTCGTAATGCTATTGAAATTATAGACC 254
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 339 TCATTCCCATTGGTCTCATTACTCTTCGTGCTTCTCGTGATGCTATTGAAATTATAGACC 398
Query 255 GGTATGATGTTGAGTGCATTCCTGAAGAATATAGAACCAACAAACTGTCGTACATAACAG 314
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
Sbjct 399 GGTATGATGTTGAGTGCATTCCTGAAGAATATAGAACCAACAAACTGTTGTATATAACTG 458
Query 315 ATTCATCTATCCCAAAGAATTGTACTCGTTACTTGAAGGTACAAAAGTATATGAAAGCTC 374
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 459 ATTCATCTATCCCAAAGAATTGTACGCGCTACTTGAAGGTACAAAAGTATATGAAAGCTC 518
Query 375 CCATTTTTATCTACTACCAGCTCGATAACTACTATCAAAACCATCGCCGGTATGTAAAGA 434
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 519 CCATTTTTATCTACTACCAGCTTGATAACTACTATCAAAACCATCGCCGGTATGTAAAGA 578
Query 435 GTAGAAGTGATCAGCAACTTTTACATGGACTGGAGTATAGCCACACAAGTTCTTGTGAAC 494
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 579 GTAGAAGTGATCAGCAACTATTACATGGACTGGAGTATAGCCACACAAGTTCTTGTGAAC 638
Query 495 CCGAGGAGTCATCTAATGGTCTCCCGATTGTTCCTTGTGGGTTAATCGCTTGGAGTATGT 554
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 639 CCGAGGAGTCATCTAATGGTCTCCCAATTGTTCCTTGTGGGTTAATTGCTTGGAGTATGT 698
Query 555 TCAATGATACATTTACGTTTTCTCGTGAAAGAACGAAACTGAAGGTGAGTCGGAATAACA 614
||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||
Sbjct 699 TCAATGATACATTTACGTTTTCTCGCGAAAGAACAAAACTGAATGTGAGCCGGAATAACA 758
Query 615 TTGCGTGGAAGAGTGACCGCGAGGAAAAGTTTGGAAAGAATGTGTATCCTTTTAATTTCC 674
||||||||||||||||||||||| | |||||||||||||||||||||||| | |||||||
Sbjct 759 TTGCGTGGAAGAGTGACCGCGAGCACAAGTTTGGAAAGAATGTGTATCCTATCAATTTCC 818
Query 675 AGAATGGAACTTTGATTGGTGGAGCAAAGTTGGATCCAAAAATTCCACTAAGTGACCAAG 734
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 AGAACGGAACTTTGATTGGTGGAGCAAAGTTGGATCCAAAAATTCCACTAAGTGACCAAG 878
Query 735 AGGATTTTATAGTGTGGATGCGAGCAGCTGCTTTGCTAAGCTTCCGGAAGTTATATGGAA 794
|||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 879 AGGACTTTATAGTGTGGATGCGAGCAGCTGCTTTACTAAGCTTCCGGAAATTATATGGAA 938
Query 795 GAATCGAAGAGGACTTGGAACCAGGAACCGTTGTTGAAGTAAATTTGATGAACAATTACA 854
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 939 GAATCGAAGAGGACTTGGAACCAGGAAAAGTTGTTGAAGTAAATTTGATGAACAATTACA 998
Query 855 ACACTTATAGCTTTAGTGGGCAGAAGAAGCTTATTCTTTCCACATCAAATTGGTTAGGAG 914
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 999 ACACTTATAGCTTTAGTGGGCAGAAGAAGCTTATTCTCTCCACATCAAATTGGTTAGGAG 1058
Query 915 GAAGAAATGATTTCCTAGGCATCACCTATCTTGTTGTTGGTTCCTCTTCCATAGTCATAT 974
|||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||
Sbjct 1059 GAAGAAATGATTTCCTGGGTATCACCTATCTTGTCGTTGGTTCCTCTTCCATAGTCATAT 1118
Query 975 CCATCATCTTCATGTTGCTCCATTTGAAAAATCCAAGGCCTTACGGGGACAATTCGTGGA 1034
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 1119 CCATCATCTTCATGTTGCTCCATTTGAAAAATCCAAGGCCATACGGTGACAATTCTTGGA 1178
Query 1035 ACAAGAAAAGCCTTTCAAGTTGAGAAGCTGTTACATTCTTTCT 1077
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 ACAAGAAAAGCCTTTCAAGTTGAGAAGCTGTTACATTCTTTCT 1221
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52760772795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5