BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948335

Length=280
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G46150.2 | Symbols:  | LEM3 (ligand-effect modulator 3) fami...   477    2e-134


> AT5G46150.2 | Symbols:  | LEM3 (ligand-effect modulator 3) family 
protein / CDC50 family protein | chr5:18707646-18710593 
REVERSE LENGTH=1689
Length=1689

 Score =  477 bits (258),  Expect = 2e-134
 Identities = 277/285 (97%), Gaps = 5/285 (2%)
 Strand=Plus/Plus

Query  1     ACTGGGTGTAAGaaaaaaaaaTGGCCAAGGAAATGAGGTTTGTTCAAACATGGGGAGAGG  60
             ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  1245  ACTGGGTGTAAGAAAAAAAAATGACCAAGGAAATGAGGTTTGTTCAAACATGGGGAGAGG  1304

Query  61    TAGCACCAAGGCTTATTGCATCTCACCAGAAACAACAACAGCAATTCTCAGACTTGCCAA  120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1305  TAGCACCAAGGCTTATTGCATCTCACCAGAAACAACAACAGCAATTCTCAGACTTGCCAA  1364

Query  121   AGCTTGAGACGATTTTTGAAGAAGGATGCTGCGTCGATAGTCTTACTGTTAGGGCACCGA  180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  1365  AGCTTGAGACGATTTTTGAAGAAGGATGCTGCGTCGATAGTCTTACTGTTAGGGCGCCGA  1424

Query  181   AGCGGATTGTAATCTTTCTTCCTCTTGCACTCTCAATGATTTTGTACATGGTGTTGCACA  240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1425  AGCGGATTGTAATCTTTCTTCCTCTTGCACTCTCAATGATTTTGTACATGGTGTTGCACA  1484

Query  241   AGAGTATCATAGGTTATT---GATTTGACT--GTCTATTGGTTTT  280
             ||||||||||||||||||   |||||||||  |||||||| ||||
Sbjct  1485  AGAGTATCATAGGTTATTATTGATTTGACTTTGTCTATTGATTTT  1529



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12868543744


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5