BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948337
Length=1172
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46130.1 | Symbols: | Protein of unknown function (DUF295) ... 1779 0.0
AT5G46140.1 | Symbols: | Protein of unknown function (DUF295) ... 486 2e-136
> AT5G46130.1 | Symbols: | Protein of unknown function (DUF295)
| chr5:18702914-18704484 REVERSE LENGTH=1369
Length=1369
Score = 1779 bits (963), Expect = 0.0
Identities = 1105/1174 (94%), Gaps = 7/1174 (1%)
Strand=Plus/Plus
Query 1 GTTTTAAAGATTCTAGAAAAATGTCTCAACCTCTCAGCCGAATCTTGAAGCCCCTTGTCC 60
||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 76 GTTTTAAAGATTCTA-AAAAATGTCTCAACCTCTCATACGAATCTTGAATCCCCTTGTCT 134
Query 61 ACACAAATGTCCTTAGAAACAATAACTTGGTTCGGTGGTGTTCGTCTACACCAATCTACC 120
||||||||||||||||||| || ||||||||| | |||||||||||||| ||||||||||
Sbjct 135 ACACAAATGTCCTTAGAAAAAACAACTTGGTTAGATGGTGTTCGTCTACGCCAATCTACC 194
Query 121 CTTTTATGTTAATTGACCACCTCCTTAAAG-TCGGAGGTTCTTCAAATGGTATCAACTCG 179
||||| |||||||||||||||||||| ||| ||||||||||||||||||||| || ||||
Sbjct 195 CTTTTTTGTTAATTGACCACCTCCTT-AAGATCGGAGGTTCTTCAAATGGTAGCAGCTCG 253
Query 180 ATATCAAGAAGGTCCGGATCAGAGGGTGAAAATGAAATCATAATTAAGAACAAGTTTTTG 239
||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 254 ATATCTAGAAGGTCCGGATCAGAGGGTGAAAACGAAATCATAATTAAGAGCAAGTTTTTG 313
Query 240 GCTGGAGAAGTCTGCCAGGCAATGACTAAGGGATTGAATCAAAGTGGAGTGAATATTCAC 299
||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||
Sbjct 314 GCTGGAGAAGTCTGCGAGGCAATGAGTATGGGATTGAATCAAAGTGGAGTGAATATTCAC 373
Query 300 ATGAAGGAAAAAACATTCCTCCGTGATATGGATAACGTTCGTCTAAACATCTATTACAAG 359
||||||||||| |||| ||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 374 ATGAAGGAAAACACATCCCTCCGTGATATGGACAACGTTCGTCTAAATATCTATTACAAG 433
Query 360 CCCTCTGACCCTAAATCAAAATCTGTTTCTGTTCATCTACCTCCTCTTCCAAAAGGCTCT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 CCCTCTGACCCTAAATCAAAATCTGTTTCTGTTCATCTACCTCCTCTTCCAAAAGGCTCT 493
Query 420 CAAATCCAAAACCTTGTCATGTCCTGTCTTCCTGACCTAGAAAATGATGATTGGGTCGTT 479
|||||||||||| ||| |||| ||| ||||||||||||| ||||||||||||||||||||
Sbjct 494 CAAATCCAAAACATTGCCATGACCTCTCTTCCTGACCTAAAAAATGATGATTGGGTCGTT 553
Query 480 GCTATCAAGTTTTCGGTATCTCGGCTTATGCTATATAGGCATAAAGACTTACGGTGGATC 539
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 554 GCTATCAAGTTTTCGGTATCTCAGCTTATGCTCTATAGGCATAAAGACTTACGGTGGATC 613
Query 540 GATATCGAAACCACGCATGGGCATGAGTCTATATGCCCATACTCAAGTCTCATGTACTCT 599
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 614 AATATCGAAACCACGCATGGGCATGAGTGTATATGCCCATACTCAAGTCTCAAGTACTCT 673
Query 600 AAGAAAGATCAAAGATTTTACACTCCAACTCCTGGTGGCGTA-TACTTGTGCTCATTTGG 658
|||||||| ||||||||||||||| |||||||||| |||| | | |||||||||||||
Sbjct 674 AAGAAAGAGCAAAGATTTTACACTTCAACTCCTGGAGGCG-ATTGGATGTGCTCATTTGG 732
Query 659 TCTCAACTTCAAAGAGAAAGACGAGCCCAAGTATGATTTAATTTG-TAAAAAAGATCTTC 717
||||||||||||||||||||||||||||| |||| || ||| ||| |||||||||||||
Sbjct 733 TCTCAACTTCAAAGAGAAAGACGAGCCCACGTATCATATAA-TTGACAAAAAAGATCTTC 791
Query 718 CTCAATATATGTTGTACGAGTTGGAGGAGATGAATTCGTTTACCAGGACAGATCATCTAG 777
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 CTCAGTATATGTTGTATGAGTTGGAGGAGATGAATTCGTTTACCAGGACAGATCATCTAG 851
Query 778 TGGAGTCACCTTCCGGGGAACAATTCCTCATCTCATGGTACTACGGAGACGACTTTGAGT 837
|||||||||| |||||||||||||||||||||||||||||||| || |||| ||||||||
Sbjct 852 TGGAGTCACCCTCCGGGGAACAATTCCTCATCTCATGGTACTATGGGGACGCCTTTGAGT 911
Query 838 CAGACGCAGTCGTGCACAAAACAAAGCGGTTCTTGGTGTTTAAAGAGCAAGAAAAGGTTA 897
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| | ||
Sbjct 912 CAGACACAGTCGTGCACAAAACAAAGCGGTTCTTGGTGTTTAAAGAGAAAGAAAATGCTA 971
Query 898 CAAGAGACAAAGATATGTATTACACTGAAAATATTGGAGATCTTTGTATTTTTCTTGGAC 957
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 AAAGACACAAAGATATGTATTACACTGAAAATATTGGAGATCTTTGTATTTTTCTTGGAC 1031
Query 958 ATGGTGAACCTATGTGTGTCCCAGCAAGCTCGTCTCCAGGTCTTAAGCCTAATTGCATCT 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 ATGGTGAACCTATGTGTGTCCCAGCAAGCTCGTCTCCAGGTCTTAAGCCTAATTGCATCT 1091
Query 1018 ATTTCGCGGGACATAACTTTGGTGTTTTCGATATCACCTCCCAAACAATCACTCTCTTCT 1077
||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||
Sbjct 1092 ATTTCGCGGGACATAACTTTGGTGTTTACGATATCACGACGCAAACAATCACTCTCTTCT 1151
Query 1078 ACACAGAGGAAGGTCCATTAAGATCCACTGCATTTCCTTTCTGGCCTCATCCATTCTCAC 1137
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1152 ACACAGAGGAAGGTCCATTAAGATCCACTGCATTTCCTTACTGGCCTCATCCATTTTCAC 1211
Query 1138 TCACTCCTAGCTAGTTGATATGGTGTTGGGTTTT 1171
||||||||| ||||||| ||||||||||||||||
Sbjct 1212 TCACTCCTACCTAGTTGGTATGGTGTTGGGTTTT 1245
> AT5G46140.1 | Symbols: | Protein of unknown function (DUF295)
| chr5:18704997-18706708 REVERSE LENGTH=1409
Length=1409
Score = 486 bits (263), Expect = 2e-136
Identities = 627/790 (79%), Gaps = 75/790 (9%)
Strand=Plus/Plus
Query 402 CCTCTTCCAAAAGGCTCTCAAATCCAAAACCTTGTC-ATGTCCTGTCT-TCCTGACCTAG 459
|||||||| ||||| ||||||||||||||| | | | ||||||| | | ||||||| ||
Sbjct 531 CCTCTTCCTAAAGGTTCTCAAATCCAAAACATAG-CGATGTCCTCT-TGTCCTGACATA- 587
Query 460 AA-AATGATGATTGGGTCGTTGCTATCAAGTTTTC-GGTATCTCGGCTT-ATGCTATATA 516
|| ||||| |||||||| | ||| |||||||||| || |||| | || | ||| ||||
Sbjct 588 AACAATGAAGATTGGGTTATGGCTGTCAAGTTTTCAGG-ATCTAAG-TTGAAGCTTTATA 645
Query 517 GGCAT---AAAGACTTACGGTGGATCGATATCGAAACCACGCATGGGCATGAGTCTATAT 573
| ||| |||||||| |||||||||||||||||||||| | |||||||||||||
Sbjct 646 GACATAACAAAGACTTTCGGTGGATCGATATCGAAACCA--C----GCATGAGTCTATAA 699
Query 574 GCCCAT-ACTCAAGTCTCATGTACTCTAAGAAAGATCAAAGATTTTACACTCCAACTCCT 632
|||| | | || ||||||||||| ||||||||||||||||| || ||| ||||||||||
Sbjct 700 GCCC-TCATTCCAGTCTCATGTATTCTAAGAAAGATCAAAGGTTCTACGTTCCAACTCCT 758
Query 633 GG-TGGCGTA-TACTTGTGCTCATTTGGTCTCAACTTCAAAGAGAAAGACGAGCCCAAGT 690
|| | || | ||||||||||| |||| |||||||||||| ||||| || ||| | |||
Sbjct 759 GGAT-GC-AATTACTTGTGCTCCTTTGATCTCAACTTCAAGGAGAAGGATAAGCTCGAGT 816
Query 691 ATGATTTAATTTG-TAAAAA-AGATCTTCCTCAATATATG--TTGTACGAGTTGGA-GGA 745
|| | | || ||||| |||||||||| || |||| |||| |||||| | |||
Sbjct 817 TTG--TCGAGGTGCGAAAAACAGATCTTCCT-AA-GTATGAATTGTTCGAGTT-TATGGA 871
Query 746 GATGAATTCGTTTACCAGGACAGATCATC-TAGTGGAGTCA-CCTTCCGGGGAACAATTC 803
||| ||||| |||||||||||||| || | | ||||||||| || ||||| |||||||||
Sbjct 872 GATAAATTCCTTTACCAGGACAGACCA-CATGGTGGAGTCATCC-TCCGGTGAACAATTC 929
Query 804 CTCATCTCATGGTACTACGGAGACGA--CT----TTGAGT-C--AGACG----CAGTCGT 850
|| |||||||||||||| || ||||| | || | | | ||| | ||||| |
Sbjct 930 CTTATCTCATGGTACTATGGGGACGAGTGTAAACTTAATTACAAAGA-GTTAACAGTCAT 988
Query 851 GCACAAAACAAAGCGGTTCTTGGTGTTTAAAGAGCAAGAAAAGGTT-A-C-A-AG--AGA 904
||||| ||||| | ||| |||||||| |||| ||||| | ||| | | | || | |
Sbjct 989 TCACAACACAAAACAATTCAAGGTGTTTAGAGAGAAAGAAGA-GTTAACCGATAGAAAAA 1047
Query 905 CAAAGA-T-ATGTATTACACTGAAAATATTGGAGATCTTTGTATTTTTCTTGGACATGGT 962
|||| | | |||| |||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1048 CAAA-ATTCATGTCTTACACCGAAAACATTGGAGATCTTTGTATTTTTCTTGGACATGGT 1106
Query 963 GAACCTATGTGTGTCCCAGCAAGCTCG-TCTCCAGGTCTTAAGCCTAATTGCATCTATTT 1021
||| || ||||| ||||||| ||| | | ||| ||||| ||||||||||||||||||||
Sbjct 1107 GAAGCTTTGTGTATCCCAGCGAGCACCAT-TCCTGGTCTAAAGCCTAATTGCATCTATTT 1165
Query 1022 CGCGGGACATAACTTTGGTGTTTTCGATATCACCTCCCAAACAAT-C-ACTCTCTTCTAC 1079
|||||||||||||| ||||||||||||||||||| ||||||| | | | |||||||| |
Sbjct 1166 CGCGGGACATAACTATGGTGTTTTCGATATCACCACCCAAACT-TGCTA-TCTCTTCTCC 1223
Query 1080 ACAGAGGAAGGTCCATTAAGATCCACTGCA-TTTCCTTTC-TGGCCTCATCCA-TTCTCA 1136
|| || ||||||| |||| |||||| || ||||||| | |||||||||||| || ||
Sbjct 1224 ACCGATGAAGGTCTGCTAAGCTCCACT-CAATTTCCTT-CGTGGCCTCATCCACTT-TCG 1280
Query 1137 CTCACTCCTA 1146
||||||||||
Sbjct 1281 CTCACTCCTA 1290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57529824570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5