BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948341
Length=1459
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46100.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2250 0.0
> AT5G46100.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:18694316-18695734 REVERSE LENGTH=1419
Length=1419
Score = 2250 bits (1218), Expect = 0.0
Identities = 1356/1423 (95%), Gaps = 8/1423 (1%)
Strand=Plus/Plus
Query 21 ATGGGTAGCAAAATGATGATGTTCAAGTGGTCTAAGAATATCACGCCTTCACAAGTTATC 80
|||||||||||| ||||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 1 ATGGGTAGCAAAGTGATGATGTTCAAGTGGTCAAAGAACATCACGCCTTCACAGGTTATC 60
Query 81 AAACTGATGCGAGCTGAAAAAGACGTGGAGAAGTCAATTGCGGTTTTTGATTCCGCAACG 140
||||||||||||||||||||||| ||||||||||| || || ||||||||||||||||||
Sbjct 61 AAACTGATGCGAGCTGAAAAAGATGTGGAGAAGTCTATGGCAGTTTTTGATTCCGCAACG 120
Query 141 GCGGAATACGCAAATGGGTACTTACATGATCAGAGTTCTTTTGGTTATATGGTGTCGAGG 200
||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||
Sbjct 121 GCGGAATACGCAAATGGGTACGTACATGATCAGAGTTCTTTTGGTTATATGGTCTTGAGG 180
Query 201 TTGGTCTCTGCTAATAAGTTCAAAGCAGCTGAAGATATTG-TTGCAAGAATGAAGATTGA 259
|||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||
Sbjct 181 TTGGTCTCTGCTAATAAGTTCAAAGCAGCTGAAGAT-CTGATTGTTAGAATGAAGATTGA 239
Query 260 GAATTGTGTTGTTAGTGAAGATATATTGCTTTCGATATGTAGAGGGTATGGTCGGGTTCA 319
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 240 GAATTGTGTTGTTAGTGAAGATATATTGCTTTCGATATGTCGAGGGTATGGTCGGGTTCA 299
Query 320 TAGGCCATTTGATTCTTTAAGGGTTTTTCACAAGATGAAGGATTTTGATTGTGATCCTAG 379
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 300 TAGGCCGTTTGATTCTTTAAGGGTTTTTCACAAAATGAAGGATTTTGATTGTGATCCTAG 359
Query 380 CCAGAAGGCTTATGTCACTGTTCTTGCTATTCTCGTGGAAGAGAATCAGTTAAATTTGGC 439
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 CCAGAAGGCTTATGTCACTGTTCTTGCCATTCTCGTGGAAGAGAATCAGTTAAATTTGGC 419
Query 440 CTTTAAGTTTTACAAGAATATGAGAGAGATTGGTTTGCCTCCTACCGTGGCATCTCTCAA 499
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 420 ATTTAAGTTTTACAAGAATATGAGAGAGATTGGTTTGCCTCCTACTGTGGCATCTCTCAA 479
Query 500 TGTTTTGATCAAAGCTCTTTGCAGAAATGACGGGACAGTTGATGCTGGTCTTAAGATTTT 559
||||||||| ||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 480 TGTTTTGATTAAAGCTCTTTGCAGAAATGACGGAACTGTGGATGCTGGTCTTAAGATTTT 539
Query 560 TCATGAAATGCCTAA-ACGAGGGTGTGATCCGGATTCTTACACGTATGGAACCTTGATTA 618
|| |||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 540 TCTTGAAATGCCTAAGA-GAGGGTGTGATCCGGATTCTTACACATATGGAACCTTGATTA 598
Query 619 GTGGTTTGTGTCGGTTCGGAAGGATTGATGAGGCGAAGAAGTTGTTTA-AGGAGATGGTT 677
||||||||||| ||||||||||||| |||||||||||||||||||||| | |||||||||
Sbjct 599 GTGGTTTGTGTAGGTTCGGAAGGATAGATGAGGCGAAGAAGTTGTTTACA-GAGATGGTT 657
Query 678 GA-AAAGGACTGTGCACCAACTGTTGTTACATATACTTCTCTGATTAACGGTTTGTGTGG 736
|| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 658 GAGAAA-GACTGTGCACCAACTGTTGTTACCTATACTTCTCTGATTAACGGTTTGTGTGG 716
Query 737 ATCGAAAAATGTTGATGAAGCTATGAGATATCTTGAAGAGATGAAAGGTAAAGGCATTGA 796
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 717 ATCGAAAAATGTTGATGAAGCTATGAGATATCTAGAAGAGATGAAAAGTAAAGGCATTGA 776
Query 797 GCCGAATGTTTTCACGTACAGTTCTTTGATGGACGGTCTTTGCAAAGATGGTCGTTCTTT 856
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 777 GCCGAATGTTTTCACGTACAGTTCTTTGATGGACGGTCTTTGCAAAGATGGGCGTTCTTT 836
Query 857 GCAAGCCATGGAATTATTTGAGATGATGATGGCTAGAGGCTGTAGGCCAAACATGGTAAC 916
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 837 GCAAGCCATGGAACTATTTGAGATGATGATGGCTAGAGGCTGCAGGCCAAACATGGTAAC 896
Query 917 GTATACCACTTTGATCACTGGTCTCTGTAAGGAGCAGAAGATTCAAGAAGCCGTTGAACT 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GTATACCACTTTGATCACTGGTCTCTGTAAGGAGCAGAAGATTCAAGAAGCCGTTGAACT 956
Query 977 TCTCGATAGAATGAATCTTCAGGGTTTAAAACCTGATGCTGGATTATATGGGAAAGTAAT 1036
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 957 TCTTGATAGAATGAATCTTCAGGGTTTGAAACCTGATGCTGGATTATATGGGAAAGTAAT 1016
Query 1037 CAGTGGGTTTTGTGCTGTCAGTAAGTTTCGCGAAGCTGCCAATTTCCTCGACGAGATGAT 1096
||||||||| |||||| | ||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1017 CAGTGGGTTCTGTGCTATTAGTAAGTTTCGTGAAGCTGCCAATTTCCTTGACGAGATGAT 1076
Query 1097 TCTTGGAGGAATTACTCCAAATCGTTTAACTTGGAACATCCATGTTAAGACAAGTAATGA 1156
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1077 TCTTGGAGGAATTACTCCAAATCGTTTAACCTGGAACATCCATGTTAAGACAAGTAATGA 1136
Query 1157 CGTAGTCCGAGGTCTTTGTACAAACTATCCAAGTCGTGCATTTACTCTATATCTAAGCAT 1216
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1137 AGTAGTCCGAGGTCTTTGTGCAAACTATCCAAGTCGTGCATTTACTCTATATCTTAGCAT 1196
Query 1217 GAGGAGTAGAGGCATCTCGGTTGAGGTTGAAACACTAGACTCCTTGGTGAAGTGTTTGTG 1276
|||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1197 GAGGAGTAGAGGAATCTCGGTTGAGGTTGAAACACTAGAATCTTTGGTGAAGTGTTTGTG 1256
Query 1277 CAAAAAGGGTGAATTCCAGAAAGCTGTTCAATTAGTTGACGAGATAGTGACTGACGGGTG 1336
|||||||||||||||||||||||||||||||||||| || || ||||||||||| |||||
Sbjct 1257 CAAAAAGGGTGAATTCCAGAAAGCTGTTCAATTAGTCGATGAAATAGTGACTGATGGGTG 1316
Query 1337 TATTCCAAATAAAGGAACATGGAAGCTACTTATAAGTCACACATTGGATAACACAATTGT 1396
|||||||| ||||||||||||||||||||||||| |||||||||||||||| || |||||
Sbjct 1317 TATTCCAAGTAAAGGAACATGGAAGCTACTTATAGGTCACACATTGGATAAAACGATTGT 1376
Query 1397 AGGAGAAGCTTCAGATTCTATTCTCAGAGATTTGGATATCTAA 1439
|||||| ||||||||| || |||||||||||||||||||||||
Sbjct 1377 AGGAGAGGCTTCAGATACTCTTCTCAGAGATTTGGATATCTAA 1419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71937380985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5