BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948342
Length=700
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46090.1 | Symbols: | Protein of unknown function (DUF679) ... 926 0.0
AT4G18425.1 | Symbols: | Protein of unknown function (DUF679) ... 351 4e-96
> AT5G46090.1 | Symbols: | Protein of unknown function (DUF679)
| chr5:18693485-18694129 FORWARD LENGTH=645
Length=645
Score = 926 bits (501), Expect = 0.0
Identities = 575/612 (94%), Gaps = 0/612 (0%)
Strand=Plus/Plus
Query 69 ATCAAAGAAGAAACTGTTCCACTCCTGGATGATCGAAATCGAAATCGGGACTTTCCTGAC 128
|||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 34 ATCAAAGAAGAAACAGTTCCACTCCTGGATGATCAAAATCGAAATCGGGACTTACCTGAC 93
Query 129 ATAGAAAGGAACACTATGATGCAAAAGGCAATAGGTAAGACTTTTCAGACCACAGCTAAT 188
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 94 ATAGAAAGGAACACTATGATGCAAAAGGCAATAGGTAAGACTTTTCAGACAACAGCTAAT 153
Query 189 CTAGCTAATCTTTTACCAACGGGGACAGTTCTTGCGTTCCAGATCTTATCGCCAATTTGC 248
||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 154 CTAGCTAATCTTTTACCTACGGGGACAGTTCTTGCATTCCAGATTTTATCGCCAATTTGC 213
Query 249 ACAAATGCTGGGCAATGCGATCTAGCTAGCAGAGTCATGACTGCATTGCTAGTTTCCATC 308
||||| | ||| | ||||||||| |||||||| |||||||||| |||||||||||||||
Sbjct 214 ACAAACGTTGGACGCTGCGATCTAACTAGCAGATTCATGACTGCGTTGCTAGTTTCCATC 273
Query 309 TGTGGGTTCTCTTGTTTCATACTTAGCTTCACAGATTCTTACAAGGACTTGAATGGAAAT 368
|| || ||||||||||||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 274 TGCGGATTCTCTTGTTTCATACTTAGCTTCACAGATTCTTACAAGGATTTGAATGGTAGT 333
Query 369 GTCTGCTATGGATTTGCAACAATCCATGGTTTTTGGATAATTGATGGCTCAGCTACTCTT 428
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 334 GTCTGCTATGGATTTGCAACAATCCATGGTTTCTGGATCATTGATGGCTCAGCTACTCTT 393
Query 429 CCTCAAGAACGTTCCAAAAGCTACAAACTACAGTTTATAGACTTCGTATATGCCATTATG 488
|||||||||| |||||||||||||||||||| |||||| ||||||||| |||||||||||
Sbjct 394 CCTCAAGAACTTTCCAAAAGCTACAAACTACGGTTTATCGACTTCGTACATGCCATTATG 453
Query 489 TCGTTTCTGGTTTTTGGAGCCGTGGTTTTGTTTGATCAGAATGCGGTTAAATGTTTCTTT 548
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
Sbjct 454 TCGTTTCTGGTTTTTGGAGCCGTGGTTTTGTTTGATCAGAATGTGGTTAACTGTTTCTAT 513
Query 549 CCTGAACCATCAGCTGAAGTAGCAGAGCTTCTCACAACTTTGCCCGTAGCCGTAGGAGTC 608
|| ||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 514 CCCGAACCATCAGCTGAAGTAGTGGAGCTTCTCACAACTTTGCCTGTAGCTGTAGGAGTC 573
Query 609 TTCTGCAGTATGGTGTTCGCTACGTTTCCTACTACACGCCACGGTATTGGTTTTCCCCTC 668
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 574 TTCTGCAGTATGGTGTTCGCTAAATTTCCAACTACACGCCACGGTATTGGTTTTCCCCTC 633
Query 669 TCTGCTAAATGA 680
||||||||||||
Sbjct 634 TCTGCTAAATGA 645
> AT4G18425.1 | Symbols: | Protein of unknown function (DUF679)
| chr4:10181334-10182140 REVERSE LENGTH=807
Length=807
Score = 351 bits (190), Expect = 4e-96
Identities = 463/588 (79%), Gaps = 46/588 (8%)
Strand=Plus/Plus
Query 117 GACTTTCCTGACATAGAAAGGAAC-ACTAT-GATGCAAAAGGCAATAGGT-AAGACTTTT 173
||||| || || ||||||| |||| || || ||| ||||||||||||||| || || |||
Sbjct 157 GACTTCCCGGATATAGAAA-GAACGAC-ATGGATACAAAAGGCAATAGGTCAA-ACATTT 213
Query 174 CAGACCACAGCTAATCTAGCTAATCTTTTACCAACGGGGACAGTTCTTGCGTTCCAG-AT 232
|| ||||| ||| || |||||||||| |||||||| || || ||||| ||||| ||| |
Sbjct 214 CAAACCACTGCTCATTTAGCTAATCTCTTACCAACAGGAACCGTTCTCGCGTTTCAGCTT 273
Query 233 CTTATCGCCAATTTGCACAAAT-GCTGGGCAATGCGATCTAGCT-AGC-AGAGTCATGAC 289
| |||||||||||| | ||||| || || ||||||||| ||| | ||| ||| | |||||
Sbjct 274 C-TATCGCCAATTTTCTCAAATGGC-GGTCAATGCGATTTAG-TGAGCAAGA-TAATGAC 329
Query 290 -T-G-CATTGCTAGTTTCCATCTGTGGGTTCTCTTGTTTCATACTTAGCTTCACAGATTC 346
| | || || ||| | || ||||| |||||||| |||||||||||||||||||||||
Sbjct 330 ATCGACACTGGTAG---CAATATGTGGATTCTCTTGCTTCATACTTAGCTTCACAGATTC 386
Query 347 TTACAAGGACTTGAATGGAAATGTCTGCTATGGATTTGCAACAATCCATGGTTTTTGGAT 406
|||||| ||| || || | | | ||||||||| |||||||||||||||| ||||||||
Sbjct 387 TTACAAAGACAAAAACGGTACTATTTGCTATGGACTTGCAACAATCCATGGGTTTTGGAT 446
Query 407 AATTGATGGCTC-AGCTACTCTTCCTCAAGAACGTTC-CAAA-AGCTACAAACTACAG-T 462
|||||||| || | | |||||||||||||| ||| | || || || || ||| || |
Sbjct 447 CATTGATGGATCCA-CAACTCTTCCTCAAGA--GTTATCTAAGAGATATAAGCTA-AGAT 502
Query 463 TTATAGACTTCGTAT-ATGCCATT-ATGTCGTT-TCTGGTTTTTGGAGCCGTGGTTTTGT 519
||||||| || || | |||| || |||||||| | | || ||||| || |||||||| |
Sbjct 503 TTATAGATTTTGT-TCATGCT-TTCATGTCGTTAT-TCGTGTTTGGTGCGGTGGTTTTAT 559
Query 520 TTGATCAGAA-TGCGGTTAAAT-GTTTCTTTCC-TGAACCATCAGCTGAAGTAGCAGA-G 575
| |||| ||| |||||| |||| |||||||||| | | || ||||| |||| | || |
Sbjct 560 TCGATC-GAAATGCGGT-AAATTGTTTCTTTCCATCA-CCGTCAGCAGAAGCATTGGAAG 616
Query 576 CTTCTCACAACTTTGCCCGTAGCCGTAGGAGTCTTCTGC-AGTATGGTGTTCGCTACGTT 634
|||| ||| ||||||| |||| |||||| || || | | |||||| |||| || || ||
Sbjct 617 -TTCTTACAGCTTTGCCGGTAGGCGTAGGGGTGTTTT-CTAGTATGTTGTTTGCAACATT 674
Query 635 TCCTACTACACGCCACGGTATTGGTTTTCCCCTCTCT-GCTAAATGAT 681
|||||| |||||| | || ||||||||||| || ||| | ||||||||
Sbjct 675 TCCTACAACACGCAATGGGATTGGTTTTCCACTTTCTAG-TAAATGAT 721
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33908049225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5