BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948358
Length=1037
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45980.1 | Symbols: WOX8, STPL | WUSCHEL related homeobox 8 ... 1448 0.0
> AT5G45980.1 | Symbols: WOX8, STPL | WUSCHEL related homeobox
8 | chr5:18648909-18650836 FORWARD LENGTH=1128
Length=1128
Score = 1448 bits (784), Expect = 0.0
Identities = 937/1009 (93%), Gaps = 17/1009 (2%)
Strand=Plus/Plus
Query 23 catcatcatG---TCCTCAAACAAAAATTGGCCAAGCATGTTCAAATCCAAACCTTGCAA 79
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 CATCATCATGTCCTCCTCAAACAAAAATTGGCCAAGCATGTTCAAATCCAAACCTTGCAA 65
Query 80 CAATAATCATCATCATCAACATGAAATCGATACTCCATCTTACATGCACTACTCTAATTG 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 CAATAATCATCATCATCAACATGAAATCGATACTCCATCTTACATGCACTACTCTAATTG 125
Query 140 CAACCTATCATCTTCCTTTTCTTCAGATCGGGTACCAGATCCTAAACCGAGATGGAACCC 199
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||
Sbjct 126 CAACCTATCATCTTCCTTTTCCTCAGATCGGATACCAGATCCTAAACCGAGATGGAATCC 185
Query 200 TAAACCGGAGCAGATTCGGATACTCGAATCAATCTTCAATTCCGGTACTGTTAACCCACC 259
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 186 TAAACCGGAGCAGATTAGGATACTCGAATCAATCTTCAATTCCGGTACTATTAACCCACC 245
Query 260 TAGAGAGGAGATTCAAAGAATCCGGATCCGGCTTCAAGAGTACGGTCAAATCGGTGATGC 319
||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 246 TAGAGAGGAGATTCAAAGAATCCGGATCCGGCTTCAAGAATATGGTCAAATCGGTGACGC 305
Query 320 TAATGTGTTTTACTGGTTTCAAAACCGGAAATCTCGAGCAAAACACAAGCTTCGTGTTCA 379
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 AAACGTGTTTTACTGGTTTCAAAACCGGAAATCTCGAGCAAAACACAAGCTTCGTGTTCA 365
Query 380 TCACAAAAACCCTAAAATGTCAAAGAAGGACAAGATGGTTATTCCTAATAATGATGCTGA 439
|||||||| |||||||||||||||||||||||||| ||||||||||| || ||| |||||
Sbjct 366 TCACAAAAGCCCTAAAATGTCAAAGAAGGACAAGACGGTTATTCCTAGTACTGACGCTGA 425
Query 440 TCATTGTTTTGGTTTTGTTAACCAAGAAACCGGATTATTTCCGGTTCAAAACAATGAATT 499
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 426 TCATTGTTTTGGTTTTGTTAACCAAGAAACCGGATTATATCCGGTTCAAAACAATGAGTT 485
Query 500 GGTGGTAACCGAACCGGCCAGTTTTCTATTCCCGGTTCATAATGATCCGAGCGCAGCTCA 559
||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||
Sbjct 486 GGTGGTAACCGAACCGGCCGGTTTTCTATTTCCGGTTCATAATGATCCGAGCGCTGCTCA 545
Query 560 ATCAGGGTTTGGTTTTAGTGATTTTGTTGTACCGGTGGTAACGGAAGAAGGGATGGCTTT 619
||||| |||||||||| | |||||||||||||||||||||||||||||||||||||| ||
Sbjct 546 ATCAGCGTTTGGTTTTGGCGATTTTGTTGTACCGGTGGTAACGGAAGAAGGGATGGCATT 605
Query 620 CTCTACCGTTAATAACGGCGTTAATTTGGAGACTGATGACAGTTTTGATAAAATTCCGGC 679
|||||||||||||||||||||||||||||||||| | || | ||||||||||||||||||
Sbjct 606 CTCTACCGTTAATAACGGCGTTAATTTGGAGACTAACGAAAATTTTGATAAAATTCCGGC 665
Query 680 GATCAATCTATACGGAGGAGATGGAAATGGCGGTGGAAATTGTTTTTCTCCTTTGACTGC 739
||||||| ||||||| |||||||||||||||||||||||||||||| | | | | |
Sbjct 666 GATCAATTTATACGGCGGAGATGGAAATGGCGGTGGAAATTGTTTT-C-C-T----C--C 716
Query 740 TCCTTTGACTGTTCCATTAGCCATCAATCAATCTCAAGAAGAACGAGATATAATATTATC 799
| || ||||||||||||| |||||||||||||||||||| |||||||| || ||||||
Sbjct 717 T--TT-GACTGTTCCATTAACCATCAATCAATCTCAAGAAAAACGAGATGTAGGATTATC 773
Query 800 CGGTGATGAAGATGTTG-AGAATAGTGTTTCTCCGGTGCGAATGACGGTGTTTATTAACG 858
||||| |||||| || | ||| || ||||| ||||||| |||||||||||||||||||||
Sbjct 774 CGGTGGTGAAGACGTCGGAGA-TAATGTTTATCCGGTGAGAATGACGGTGTTTATTAACG 832
Query 859 ACATGCCTTTTGAGGTAGTGCCCGGATTATTCAACGTTAAAGCAGCTTTTGGAAACGATG 918
| |||||| | || |||||| | ||||||||||||||||| |||||||| ||||||||||
Sbjct 833 AGATGCCTATCGAAGTAGTGTCTGGATTATTCAACGTTAAGGCAGCTTTCGGAAACGATG 892
Query 919 CAGTTTTGATCAACTCGTTTGGGCAACCTATTCATACAGATGAATTTGGTGTTACTTATC 978
| |||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||
Sbjct 893 CCGTTTTGATCAACTCGTTTGGCCAGCCTATTCTTACAGATGAATTTGGTGTTACTTATC 952
Query 979 AACCTCTCCAAAACGGGGCAATCTATTATCTTATTTAGAAGATATTGAA 1027
||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 953 AACCTCTCCAAAATGGCGCAATCTATTATCTTATTTAGAAGATATTGAA 1001
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50836956764
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5