BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948369
Length=1167
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45910.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1857 0.0
> AT5G45910.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr5:18620299-18622301 REVERSE LENGTH=1277
Length=1277
Score = 1857 bits (1005), Expect = 0.0
Identities = 1117/1171 (95%), Gaps = 8/1171 (1%)
Strand=Plus/Plus
Query 1 aaaaaaaaaaaaaaaTCATAGAATGAGAATCAATATGTTATTCATCGTGGCATTCTCTTT 60
||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||| ||
Sbjct 16 AAAAAAAAAAAGAAATCATAAAATGAGAATCAATATGTTATTCATAGTGGCATTCTCATT 75
Query 61 TTTAGTCTCCGTTCGGTCATTACCGATGAAACCAACTCTAAACTACGACTCAATCTTTAA 120
||||||||| ||||||||||||||||||| |||||||||||| ||||| |||||||||||
Sbjct 76 TTTAGTCTCTGTTCGGTCATTACCGATGAGACCAACTCTAAAGTACGAGTCAATCTTTAA 135
Query 121 TTTCGGCGATTCTTTAAGCGATACCGGAAACTTTTTAATATCCGGTGATGTCGACTCTCC 180
||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 136 TTTTGGCGATTCTTTAAGCGATACCGGAAACTTTTTATTATCCGGTGATGTTGACTCTCC 195
Query 181 GAACATTGGAAGACCACCATACGGACAAACCTTTTTTAACCGTTCTACCGGTCGTTGCTC 240
|||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 196 GAACATTGGAAGACTACCGTACGGACAAACCTTTTTTAACCGTTCCACCGGTCGTTGCTC 255
Query 241 CGACGGACGTCTCATCATCGATTTCATCGCTGAGGCAAGTGGACTGCCGTACATTCCACC 300
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 256 TGACGGACGTCTCATCATCGATTTCATCGCTGAGGCTAGTGGACTACCGTACATTCCACC 315
Query 301 GTATCTTCAAAGCGTGCGGACGAATAATTCGGTAGATTTCAAGAGAGGAGCAAATTTTGC 360
|||||| |||||| | ||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 316 GTATCTCCAAAGCTTACGGACGAATGATTCGGTAGATTTCAAGAGAGGTGCAAATTTTGC 375
Query 361 GGTGGCCGGAGCAACAGCGAACGAATTTAGCTTCTTTAAAGAA-AGAGGTCTTTCAGTAA 419
|||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 376 GGTGGCTGGAGCAACAGCGAACGAATTTAGCTTCTTTAAA-AACAGAGGTCTTTCAGTAA 434
Query 420 CATTGTTGACAAACAAGACACTGGATATTCAACTTGGTTGGTTCAAGAAGTTGAAACCTT 479
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 435 CATTGTTGACAAACAAGACACTGGATATTCAACTTGATTGGTTCAAGAAGTTGAAACCTT 494
Query 480 CTCTGTGTAAAACCAAGCCAGAATGTGAACAATATTTTAGAAAATCTCTATTTCTCGTCG 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 495 CTCTGTGTAAAACCAAGCCAGAATGTGAACAATATTTTAGAAAATCTCTATTTCTCGTTG 554
Query 540 GAGAAATTGGTGGAAACGATTATAACTACCCTCTTTTGGCATTCCGAAGTTTCAAACATG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 GAGAAATTGGTGGAAACGATTATAACTACCCTCTTTTGGCATTCCGAAGTTTCAAACATG 614
Query 600 CTATGGATTTGGTACCATTTGTCATTAACAAAATCATGAACGTCACAAGTGCATTGATAG 659
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 615 CTATGGATTTGGTACCATTTGTTATTAACAAAATCATGGACGTCACAAGTGCATTGATAG 674
Query 660 AGGAAGGTGCGGTGACACTGATGGTTCCAGGAAACCTTCCAATCGGTTGTTCTGCGGTTC 719
|||||||||| ||||||| || |||||||||||||||||||||||||||||||||| ||
Sbjct 675 AGGAAGGTGCCATGACACTAATAGTTCCAGGAAACCTTCCAATCGGTTGTTCTGCGGCTC 734
Query 720 TACTAGAGCGGTTTAATGATAATAGTGGATGGCTTTATGACTCGAGGAACCAATGCTACA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 TACTAGAGCGGTTTAATGATAATAGTGGATGGCTTTATGACTCGAGGAACCAATGCTACA 794
Query 780 AGCCATTGAACAATTTGGCTAAGCTTCACAACGATAAGCTCAAGAAAGGCCTTGCGGCTC 839
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 795 TGCCATTGAACAATTTGGCTAAGCTTCACAATGATAAGCTCAAGAAAGGCCTCGCGGCTC 854
Query 840 TAAGAGAAAAGTACCCTCATGCCAAAATTATGTATGCTGATTATTACAGTTCTGCCATGC 899
||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 855 TAAGAAAAAAGTACCCTTATGCCAAAATTATATATGCTGATTATTACAGTTCTGCCATGC 914
Query 900 AATTCTTCAACTCACCTTCCAAATACGGTTTCACTGGAAGTGTCCTAAAGGCATGTTGTG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 AATTCTTCAACTCACCTTCCAAATACGGTTTCACTGGAAGTGTCCTAAAGGCATGTTGTG 974
Query 960 GAGGAGGAGATGGAAGATACAACGCGAAACCAAGCGTGCGGTGCGGAGAAAAGGGTTCAA 1019
|||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||
Sbjct 975 GAGGAGGAGATGGAAGATACAACGTGCAACCAAACGTGCGGTGCGGAGAAAAGGGTTCAA 1034
Query 1020 CCACTTGCGAAAATCCATCAACGTACGCAAATTGGGACGGAATTCACCTAACTGAAGCGG 1079
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1035 CCACTTGCGAAGATCCATCAACGTACGCAAATTGGGACGGAATTCACCTCACTGAAGCGG 1094
Query 1080 CTTACCGCCACATTGCAACTGGTCTCATCTCCGGCCGTTTCACCATGCCTTCTTATGAT- 1138
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1095 CTTACCGCCACATTGCAACTGGTCTCATCTCCGGCCGTTTCACCATGCCTACTTATAATT 1154
Query 1139 AA---CAATTAA-TTAACTTATAAGTTGTAA 1165
|| ||||||| ||| || |||||||||||
Sbjct 1155 AATAACAATTAAGTTA-CTCATAAGTTGTAA 1184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57278821845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5