BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948370
Length=268
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45905.1 | Symbols: | Encodes a defensin-like (DEFL) family... 307 3e-83
> AT5G45905.1 | Symbols: | Encodes a defensin-like (DEFL) family
protein. | chr5:18619461-18619870 FORWARD LENGTH=216
Length=216
Score = 307 bits (166), Expect = 3e-83
Identities = 205/222 (92%), Gaps = 9/222 (4%)
Strand=Plus/Plus
Query 27 ACTAAACACATTCAACTGTCGTTCACCGTTTTAGCTATCTTCAGCATTTTCGTGCTTGGA 86
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 ACTAAACTTATTCAACTCTCGTTCACCGTTTTAGCTATCTTCAGCATTTTCGTGCTTGGA 63
Query 87 GTGGTCGGAAATGAGTATAAATGTTCGGAAATTCTGTTTCGAAAGAGTAAGTGTGATTAT 146
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 GTGGTCGAAAATGAGTATAAATGTTCGGAAATTCTGTTTCGAAAGAGTAAGTGTGATTAT 123
Query 147 CAAGAGTGTGGGTTGATGTGTGTTTTGAAGAGGCAGGGGTTGTCAAGTTGCACTAAACAG 206
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 124 CAAGAGTGTGGGTTGATGTGTGTTTTGAAGAGGCAGGGGTTGTCAAGTTGCTCTAATGAG 183
Query 207 GGGAGATTTTTTATATGTTCTTGCCAGTATCAATGCCCTTAA 248
|| | | || ||||||||||||||||||||||||||
Sbjct 184 GGCA--T-----AT--GTTCTTGCCAGTATCAATGCCCTTAA 216
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12265330756
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5