BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948373

Length=205
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G07700.3 | Symbols:  | Thioredoxin superfamily protein | chr...   154    3e-37


> AT1G07700.3 | Symbols:  | Thioredoxin superfamily protein | chr1:2379647-2381362 
FORWARD LENGTH=1539
Length=1539

 Score =  154 bits (83),  Expect = 3e-37
 Identities = 83/83 (100%), Gaps = 0/83 (0%)
 Strand=Plus/Plus

Query  89    AGCTCCTGTTATCTTCCTTAAGCATAATGTGGTAGATGAATATGATGAACAATCTGAAGT  148
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1109  AGCTCCTGTTATCTTCCTTAAGCATAATGTGGTAGATGAATATGATGAACAATCTGAAGT  1168

Query  149   CGCAGAAAGGCTCCGTATCAAGG  171
             |||||||||||||||||||||||
Sbjct  1169  CGCAGAAAGGCTCCGTATCAAGG  1191



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9154845882


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5