BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948377

Length=589
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G16910.1 | Symbols: LSH8 | Protein of unknown function (DUF6...  76.8    2e-13


> AT1G16910.1 | Symbols: LSH8 | Protein of unknown function (DUF640) 
| chr1:5785003-5785927 FORWARD LENGTH=925
Length=925

 Score = 76.8 bits (41),  Expect = 2e-13
 Identities = 115/149 (77%), Gaps = 12/149 (8%)
 Strand=Plus/Plus

Query  228  GACCAATTCGGTAAAACCAAAGTCCATAAT-CAAGCTTGTGTTTTCTTTGGACA-ACCCG  285
            ||||| || |||||||| ||||| ||| || ||||  || |||||||| ||||| |   |
Sbjct  560  GACCAGTTTGGTAAAACAAAAGTTCAT-ATCCAAGGATGCGTTTTCTTCGGACAGA-AAG  617

Query  286  ATCCACC-GTCGCCTTG-CACGTGTCC-TCT-AAAGCAAGCTTGGGGAAGCTTAGATGCT  341
            | ||||| |  |   ||  || || || | | ||| || || ||||||||||||||||||
Sbjct  618  AGCCACCAGGAG-AGTGTAAC-TGCCCGT-TGAAA-CAGGCGTGGGGAAGCTTAGATGCT  673

Query  342  TTGATCGGACGGTTAAGAGCTGCTTACGA  370
            |||||||||||| | ||||| ||||||||
Sbjct  674  TTGATCGGACGGCTGAGAGCAGCTTACGA  702



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28332058908


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5