BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948378
Length=528
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45870.1 | Symbols: PYL12, RCAR6 | PYR1-like 12 | chr5:18606... 688 0.0
AT5G45860.1 | Symbols: PYL11, RCAR5 | PYR1-like 11 | chr5:18604... 518 3e-146
> AT5G45870.1 | Symbols: PYL12, RCAR6 | PYR1-like 12 | chr5:18606564-18607043
REVERSE LENGTH=480
Length=480
Score = 688 bits (372), Expect = 0.0
Identities = 446/482 (93%), Gaps = 4/482 (1%)
Strand=Plus/Plus
Query 25 ATGAAAACATCTCAAAAACAGCATGTATGCGGTTCGACATTAGTACAAACTATCAATGCT 84
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 ATGAAAACATCTCAAGAACAGCATGTATGCGGTTCGACAGTAGTACAAACTATCAATGCT 60
Query 85 CCATTACCTCTAGTATGGTCAATCCTACGTCGTTTTGATAACCCAAAAACATATAAACAG 144
|| ||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||
Sbjct 61 CCGTTACCTCTAGTATGGTCGATCCTACGTCGATTTGATAACCCAAAAACATTTAAACAT 120
Query 145 TTCGTGAAAAA-GTGCGAGCTACGCTCGGGAGATGGAGGAGAAGGTTCTGTCCGTGAAGT 203
||||| ||||| || | |||||||| || |||||||||||||| ||||||||||||||
Sbjct 121 TTCGT-AAAAACTTGTAAACTACGCTCCGGCGATGGAGGAGAAGGCTCTGTCCGTGAAGT 179
Query 204 CACGGTGGTTTCAGATTTTCCGGCGAGTTTCAGCCTAGAAAGATTAGATGAACTTGACGA 263
|||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 180 CACGGTGGTTTCCGATCTTCCGGCGAGTTTTAGCCTAGAAAGATTAGATGAACTTGACGA 239
Query 264 TGAGTCTCATGTGATGGTGATCAGCATTATTGGTGGTGATCATCGTTTGGTTAATTACCG 323
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGAGTCTCATGTGATGGTGATCAGCATTATTGGTGGTGATCATCGTTTGGTTAATTACCA 299
Query 324 GTC-AAAGACGATGGTGTTTGTGGCGACGGAGGAGGAGAAGACGGTGGTGGAGGAGAGTT 382
||| ||| || | ||||||||||||| |||||||||||||||| ||||| | ||||||||
Sbjct 300 GTCGAAA-ACTACGGTGTTTGTGGCGGCGGAGGAGGAGAAGACAGTGGTTGTGGAGAGTT 358
Query 383 ATGTGGTGGATGTGCCGGAAGGAAATACTGATGAGGAAACGACGTTGTTTGCTAATACTA 442
||||||||||||||||||||||||||||||| || ||||| |||||||||||| ||||||
Sbjct 359 ATGTGGTGGATGTGCCGGAAGGAAATACTGAGGAAGAAACTACGTTGTTTGCTGATACTA 418
Query 443 TCGTTAAGTGTAATCTTAGGTCATTGGCTAAGTTATCGGAGAAGATGGTGGAGCTCACGT 502
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 419 TCGTTGGGTGTAATCTTAGGTCATTGGCTAAGTTATCGGAGAAGATGATGGAGCTCACTT 478
Query 503 AA 504
||
Sbjct 479 AA 480
> AT5G45860.1 | Symbols: PYL11, RCAR5 | PYR1-like 11 | chr5:18604101-18604586
REVERSE LENGTH=486
Length=486
Score = 518 bits (280), Expect = 3e-146
Identities = 427/496 (86%), Gaps = 18/496 (4%)
Strand=Plus/Plus
Query 25 ATGAAAACATCTCAAAAACAGCATGTATGCGGTTCGACATTAGTACAAACTATCA-ATGC 83
||| |||| ||||||||| | ||| |||||||| ||| ||||||||||||| | ||||
Sbjct 1 ATGGAAACTTCTCAAAAATATCATACGTGCGGTTCCACACTAGTACAAACTAT-AGATGC 59
Query 84 TCCATTACCTCTAGTATGGTCAATCCTACGTCGTTTTGATAACCCAAAAACATATAAACA 143
|||| || ||||||| |||||||| |||||||| ||||||||||| || | || |||||
Sbjct 60 TCCACTATCTCTAGTTTGGTCAATTCTACGTCGGTTTGATAACCCTCAAGCCTACAAACA 119
Query 144 GTTCGTGAAAAAGTGCGAGCTACGCTCGGGAGATGGAGGAGAAGGTTCTGTCCGTGAAGT 203
|||||||||| |||| | ||| |||| || |||||||||||||| || |||||||||||
Sbjct 120 ATTCGTGAAAACGTGCAATCTAAGCTCCGGCGATGGAGGAGAAGGCTCCGTCCGTGAAGT 179
Query 204 CACGGTGGTTTCAGATTTTCCGGC-GAGTTTCAGCCTAGAAAGATTAGATGAACTTGACG 262
||||||||||| | | |||| || ||| ||||||| ||| |||||||||||||||||||
Sbjct 180 GACGGTGGTTTCCGGTCTTCCAGCGGAG-TTCAGCCGAGAGAGATTAGATGAACTTGACG 238
Query 263 ATGAGTCTCATGTGATGGTGATCAGCATTATTGGTGGTGATCATCGTTTGGTTAATTACC 322
||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||
Sbjct 239 ATGAGTCTCATGTGATGATGATTAGCATTATAGGTGGTGATCATCGTTTGGTTAATTACC 298
Query 323 GGTC-AAAGACGATGGTGTTTGTGGCGACGGA---GGAGGAGAAGACGGTGGTGGAGGAG 378
|||| ||| ||||||| |||||||||| |||| |||||||||||||||||||| ||||
Sbjct 299 GGTCGAAA-ACGATGGCGTTTGTGGCGGCGGATACGGAGGAGAAGACGGTGGTGGTGGAG 357
Query 379 AGTTATGTGGTGGATGTGCCGGAAGGAAATACTGATGAGGAAACGACGT-TGTTTGCTAA 437
||||||||||||||||||||||||||||||| ||| ||||||||||||| | |||||| |
Sbjct 358 AGTTATGTGGTGGATGTGCCGGAAGGAAATAGTGAGGAGGAAACGACGTCT-TTTGCTGA 416
Query 438 TACTATCGTTAAGTGTAATCTTAGGTCATTGGCTAAGTTATCGGAGAAGATGGTGGAGCT 497
||| |||||| || |||||||| ||||||||||||| | ||||||| | ||||| ||
Sbjct 417 TACAATCGTTGGGTTTAATCTTAAGTCATTGGCTAAGCTCTCGGAGA-G--GGTGG--CT 471
Query 498 CA-CGTAAAGTTGTAA 512
|| | |||||||||||
Sbjct 472 CATC-TAAAGTTGTAA 486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25267775941
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5