BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948379
Length=531
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45860.1 | Symbols: PYL11, RCAR5 | PYR1-like 11 | chr5:18604... 734 0.0
AT5G45870.1 | Symbols: PYL12, RCAR6 | PYR1-like 12 | chr5:18606... 475 2e-133
> AT5G45860.1 | Symbols: PYL11, RCAR5 | PYR1-like 11 | chr5:18604101-18604586
REVERSE LENGTH=486
Length=486
Score = 734 bits (397), Expect = 0.0
Identities = 462/492 (94%), Gaps = 9/492 (2%)
Strand=Plus/Plus
Query 23 ATGGATACTTCTCAAGAATATCATAAGTGCGGTTCCACACTAGCACAAACTATAGATGCT 82
||||| ||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1 ATGGAAACTTCTCAAAAATATCATACGTGCGGTTCCACACTAGTACAAACTATAGATGCT 60
Query 83 CCACTATC-CATAGTTTGGTCGATACTCCGTCGTTTTGATAACCCTCAAGCCTACAAACA 141
|||||||| | |||||||||| || || ||||| ||||||||||||||||||||||||||
Sbjct 61 CCACTATCTC-TAGTTTGGTCAATTCTACGTCGGTTTGATAACCCTCAAGCCTACAAACA 119
Query 142 ATTCGTGAAAACGTGCAATCTAAGCTTCGGCGATGGAGGAGCAGGCTCCGTCCGTGAAGT 201
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 120 ATTCGTGAAAACGTGCAATCTAAGCTCCGGCGATGGAGGAGAAGGCTCCGTCCGTGAAGT 179
Query 202 GACGGTGGTTTCCGGTCTTCCGGCCGAGTTCAGCCAAGAGAGGTTAGATGAACTTGACGA 261
||||||||||||||||||||| || |||||||||| |||||| |||||||||||||||||
Sbjct 180 GACGGTGGTTTCCGGTCTTCCAGCGGAGTTCAGCCGAGAGAGATTAGATGAACTTGACGA 239
Query 262 TGAGTCTCATATGATGGTAATTAGTATTATAGGTGGTGATCATCGTTTGGTTAATTACCA 321
|||||||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||
Sbjct 240 TGAGTCTCATGTGATGATGATTAGCATTATAGGTGGTGATCATCGTTTGGTTAATTACCG 299
Query 322 GTCGAAAACGATGGCGTTTGTGGCGGCGGATGA-GGAGGAGAAGACGGTGGTGGTGGAGA 380
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 300 GTCGAAAACGATGGCGTTTGTGGCGGCGGAT-ACGGAGGAGAAGACGGTGGTGGTGGAGA 358
Query 381 GTTATGTGGTTGATGTGCCAGAAGGAAATAGTGAGGAGGAAACGACGTCTTTTGCTGATA 440
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GTTATGTGGTGGATGTGCCGGAAGGAAATAGTGAGGAGGAAACGACGTCTTTTGCTGATA 418
Query 441 -ATATCGTTGGGTTTAATCTTAAGTCATTGGCTAAGCTCTCGGAGAAGATGGTGGCTCAT 499
| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 419 CA-ATCGTTGGGTTTAATCTTAAGTCATTGGCTAAGCTCTCGGAGA-G--GGTGGCTCAT 474
Query 500 CTAAAGTTGTAA 511
||||||||||||
Sbjct 475 CTAAAGTTGTAA 486
> AT5G45870.1 | Symbols: PYL12, RCAR6 | PYR1-like 12 | chr5:18606564-18607043
REVERSE LENGTH=480
Length=480
Score = 475 bits (257), Expect = 2e-133
Identities = 400/468 (85%), Gaps = 13/468 (3%)
Strand=Plus/Plus
Query 32 TCTCAAGAATATCAT-AAGTGCGGTTCCACACTAGCACAAACTAT-AGATGCTCCACTAT 89
||||||||| | ||| | |||||||| ||| ||| ||||||||| | ||||||| ||
Sbjct 10 TCTCAAGAACAGCATGTA-TGCGGTTCGACAGTAGTACAAACTATCA-ATGCTCCGTTA- 66
Query 90 CC-ATAGTTTGGTCGATACTCCGTCGTTTTGATAACCCTCAAGCCTACAAACAATTCGTG 148
|| |||| |||||||| || ||||| ||||||||||| || | | ||||| |||||
Sbjct 67 CCTCTAGTATGGTCGATCCTACGTCGATTTGATAACCCAAAAACATTTAAACATTTCGTA 126
Query 149 AAAACGTGCAATCTAAGCTTCGGCGATGGAGGAGCAGGCTCCGTCCGTGAAGTGACGGTG 208
||||| || || ||| ||| |||||||||||||| |||||| ||||||||||| ||||||
Sbjct 127 AAAACTTGTAAACTACGCTCCGGCGATGGAGGAGAAGGCTCTGTCCGTGAAGTCACGGTG 186
Query 209 GTTTCCGGTCTTCCGGCCGAG-TTCAGCCAAGAGAGGTTAGATGAACTTGACGATGAGTC 267
||||||| |||||||| |||| || |||| ||| || |||||||||||||||||||||||
Sbjct 187 GTTTCCGATCTTCCGG-CGAGTTTTAGCCTAGAAAGATTAGATGAACTTGACGATGAGTC 245
Query 268 TCATATGATGGTAATTAGTATTATAGGTGGTGATCATCGTTTGGTTAATTACCAGTCGAA 327
|||| ||||||| || || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 246 TCATGTGATGGTGATCAGCATTATTGGTGGTGATCATCGTTTGGTTAATTACCAGTCGAA 305
Query 328 AACGATGGCGTTTGTGGCGGCGGATGAGGAGGAGAAGACGGTGGTGGTGGAGAGTTATGT 387
||| | || ||||||||||||||| | | |||||||||| ||||| ||||||||||||||
Sbjct 306 AACTACGGTGTTTGTGGCGGCGGA-G-G-AGGAGAAGACAGTGGTTGTGGAGAGTTATGT 362
Query 388 GGTTGATGTGCCAGAAGGAAATAGTGAGGAGGAAACGACGTCT-TTTGCTGATAATATCG 446
||| |||||||| |||||||||| |||||| ||||| |||| | |||||||||| |||||
Sbjct 363 GGTGGATGTGCCGGAAGGAAATACTGAGGAAGAAACTACGT-TGTTTGCTGATACTATCG 421
Query 447 TTGGGTTTAATCTTAAGTCATTGGCTAAGCTCTCGGAGAAGATGGTGG 494
|||||| |||||||| ||||||||||||| | |||||||||||| |||
Sbjct 422 TTGGGTGTAATCTTAGGTCATTGGCTAAGTTATCGGAGAAGATGATGG 469
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25418478382
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5