BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948388
Length=1180
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45790.2 | Symbols: | Ubiquitin carboxyl-terminal hydrolase... 1450 0.0
> AT5G45790.2 | Symbols: | Ubiquitin carboxyl-terminal hydrolase
family protein | chr5:18572301-18573664 FORWARD LENGTH=1364
Length=1364
Score = 1450 bits (785), Expect = 0.0
Identities = 934/1005 (93%), Gaps = 14/1005 (1%)
Strand=Plus/Plus
Query 160 CTAGATGGAAGAATCTCGTTGGTTTGAATGTAAAGT-TTGGAGCTTTTGTAAGTAAGTAT 218
|||||||||||||||||||||||||||||||||| | ||||||||||| | ||||||||
Sbjct 370 CTAGATGGAAGAATCTCGTTGGTTTGAATGTAAA-TGTTGGAGCTTTTATCGGTAAGTAT 428
Query 219 CCTCATGCTTTTGAGATCTTTACACATCCTTGTAGGAAGAATATGTGTTGTAAGATTACT 278
||||||||||||||||||||||||||||||| ||| |||||| | |||||||||||||||
Sbjct 429 CCTCATGCTTTTGAGATCTTTACACATCCTTTTAGTAAGAATCTTTGTTGTAAGATTACT 488
Query 279 GAGAAGTTTAAGGTTTTGATTGATGAGGAAGAGAGTGTTGTTAGAGAGTGTGAGGTTGAT 338
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 489 GAGAAGTTTAAGGTATTGATTGATGAGGAAGAGAATGTTGTTAGAGAGTGTGAGGTTGAT 548
Query 339 GCTGTGAAGAGGGTAAAGAAGTTGTTGTTGATGTCGAAAAC-CGGTGTTCTTCGTGTTCA 397
|||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||| ||
Sbjct 549 GCTGTGAAGAGGGTAAAGAAGTTGTTGTTGTTGTCG-AAACACGGTGTTCTTCGTGTACA 607
Query 398 TGCTTTGAGGTTGATTAGAAAGGAATTGGGTTTGCCTGAGGATTTTCGAGATTCGATTTT 457
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 608 TGCTTTGAGGTTGATTAGAAAGGAATTGGGTTTGCCTGAGGATTTTCGAGATTCTATTTT 667
Query 458 GGCTAAGTATAGTTCAGATTTCAGGTTGGTTGATTTAGAGACTTTGGAATTAGTTGATGG 517
||||||||||||||||| |||||||| |||||||| |||||||| || |||||||||
Sbjct 668 AGCTAAGTATAGTTCAGAGTTCAGGTTAGTTGATTTGGAGACTTTAGAGTTAGTTGAT-- 725
Query 518 AGGTGGTGAGAATGAGAGATTGTGTGTGGCAAAAGTTGAGGAGTGGAGAGAAGTTGAATA 577
| | | | | ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 726 A-GAGAT--G-ATGAGAGTTTGTGTGTGGCAAAAGTTGAGGAGTGGAGAGAAGTTGAATA 781
Query 578 TAGAGAGAAATGGTTGAGTGAGTTTGAGACGAATTACGCTTTTCCGATTCATCTTCCTAC 637
||||||||||||||| ||| ||||||||||||||||||| ||||| ||||||||||||||
Sbjct 782 TAGAGAGAAATGGTTAAGTAAGTTTGAGACGAATTACGCGTTTCCTATTCATCTTCCTAC 841
Query 638 AGGATTCAAGATTGAGAAAGGATTCAGAGAAGAGTTAAAGAATTGGCAAAGGGTTCCTTA 697
||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 842 AGGGTTCAAGATTGAGAAAGGGTTTAGAGAAGAGTTAAAGAATTGGCAAAGGGTTCCTTA 901
Query 698 TGTGAAGCCTTATGATAGAAAGGAGATTTCTCGAGGGTTAGAGAGATTCGAGAAGCGAGT 757
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 902 TGTGAAGCCTTATGATAGAAAGGAGATTTCTCGAGGGTTAGAGCGATTCGAGAAGCGTGT 961
Query 758 GGTTGCAGTTATTCATGAGCTTCTGAGCTTAACGGTAGAGAAAATGGTTGAAGTCGAGAG 817
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 962 TGTTGCAGTTATCCATGAGCTTCTGAGCTTAACGGTAGAGAAAATGGTTGAAGTTGAGAG 1021
Query 818 ATTAGCTCATTTCCGAAAGGATCTTGGCATTGAAGTAAATGTCAGGGAAGTAATATTGAA 877
|||||||||||| |||||||||||||| ||||||||||| || |||||||| ||||||||
Sbjct 1022 ATTAGCTCATTTTCGAAAGGATCTTGGTATTGAAGTAAACGTGAGGGAAGTTATATTGAA 1081
Query 878 ACATCCCGGGATTTTCTATGTATCGACGAAAGGAAGTACG-CAGACATTGTTTCTTAGAG 936
||||||||||||||||||||| |||||||||||||||| | ||||| |||||||| ||||
Sbjct 1082 ACATCCCGGGATTTTCTATGTGTCGACGAAAGGAAGTA-GTCAGACTTTGTTTCTAAGAG 1140
Query 937 AAGCTTATAGCAAAGGCTGTTTGATTGAGCCAAATCCGATATACAATGTGCGGAGGAAAA 996
|||||||||||||||| |||||||||||||| || ||||||||||||||| |||||||||
Sbjct 1141 AAGCTTATAGCAAAGGGTGTTTGATTGAGCCGAACCCGATATACAATGTGAGGAGGAAAA 1200
Query 997 TGCTGGATCTTGTGTTGTTGAAAACGCGACATACGAGAAAGTTATTACAAACGGAAGATG 1056
|||| ||||||||||||||||||||||| || |||||| ||| ||||||| ||||||||
Sbjct 1201 TGCTTGATCTTGTGTTGTTGAAAACGCGTTATTCGAGAATGTTGTTACAAAGGGAAGATG 1260
Query 1057 AAACTCAT-GAAGAAGAGAAGAGTAGAGATGTTTTGACTAGCTCTCATGAAGATTGGGAA 1115
|||||||| || ||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1261 AAACTCATAGA-GAAGAGAAGAGTAGAGATGTTTTGATTAGCTCTAATGAAGATTGGGAA 1319
Query 1116 GGAGAGAGAGATGGAGATTGGGTCTTACCTATTCTGGGGAAATGA 1160
|||| |||||||||||||||||||||||| ||| |||||||||||
Sbjct 1320 GGAGGGAGAGATGGAGATTGGGTCTTACCAATTTTGGGGAAATGA 1364
Score = 255 bits (138), Expect = 5e-67
Identities = 153/160 (96%), Gaps = 1/160 (1%)
Strand=Plus/Plus
Query 2 AAATTCACAGT-AAAAAGATATGAATTCTCTAAAATCTTTGAGATACAGTAGCATTAGAG 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 AAATTCACAGTAAAAAAGATATGAATTCTCTAAAATCTTTGAGATACAGTAGCATTAGAG 132
Query 61 AAGTTTTAACACATCAAAACCCAACAAAGTCTCCATTTTTATGTCCACTTTACTTCTACA 120
||| ||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 133 AAGCTTTGACACATCAAAACCCAACAAAGTCTTCATTTTTATGCCCACTTTACTTCTACA 192
Query 121 ATCAAAAAAGATGGTTAAAGCCTGTAGATTCAGCACAAAC 160
||||| |||||||||||||||||||||||||||||||||
Sbjct 193 ATCAACGAAGATGGTTAAAGCCTGTAGATTCAGCACAAAC 232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57931428930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5